Phenotype measure:   Brown2   rev_lat_d3


  STRAIN COMPARISON PLOT
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Brown2 - reversal training mean latency to find hidden platform, day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested13 strains14 strains
Mean of the strain means32.4   s 30.7   s
Median of the strain means35.7   s 33.0   s
SD of the strain means± 11.8 ± 14.9
Coefficient of variation (CV)0.363 0.485
Min–max range of strain means14.5   –   50.4   s 10.4   –   52.6   s
Mean sample size per strain10.4   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 906.0742 906.0742 5.0611 0.0254
strain 12 32590.7605 2715.8967 15.1704 < 0.0001
sex:strain 12 4092.2394 341.0199 1.9049 0.0345
Residuals 239 42787.2798 179.0263


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 17.8 14.0   12 4.04 0.786 6.85, 59.9 -1.24
129S1/SvImJ m 19.1 17.3   12 5.0 0.905 6.05, 60.0 -0.78
A/J f 50.4 7.51   6 3.06 0.149 37.7, 60.0 1.53
A/J m 38.3 15.7   18 3.7 0.409 12.7, 59.9 0.51
AKR/J f 21.5 11.9   12 3.43 0.553 6.41, 46.9 -0.93
AKR/J m 25.8 9.15   12 2.64 0.355 11.9, 46.4 -0.33
BALB/cByJ f 39.7 18.8   15 4.87 0.475 11.5, 60.0 0.62
BALB/cByJ m 17.7 17.2   6 7.02 0.972 5.65, 50.4 -0.87
BALB/cJ f 39.0 11.3   14 3.03 0.29 11.5, 56.8 0.56
BALB/cJ m 33.8 15.2   10 4.8 0.449 15.1, 59.6 0.21
C3H/HeJ f 42.5 13.5   10 4.27 0.318 26.8, 59.9 0.86
C3H/HeJ m 38.3 15.2   9 5.08 0.398 12.0, 59.9 0.51
C57BL/6J f 14.5 5.41   12 1.56 0.373 7.29, 25.2 -1.52
C57BL/6J m 10.4 5.96   12 1.72 0.573 4.32, 23.4 -1.36
CAST/EiJ f 30.6 14.6   10 4.63 0.479 4.53, 47.3 -0.15
CAST/EiJ m 32.1 19.4   11 5.85 0.603 10.4, 60.0 0.1
DBA/2J f 28.0 12.2   6 4.98 0.436 11.8, 44.4 -0.37
DBA/2J m 11.1 4.2   6 1.72 0.378 5.57, 16.0 -1.31
FVB/NJ f 37.7 15.5   6 6.34 0.412 17.7, 57.6 0.45
FVB/NJ m 46.9 11.0   6 4.47 0.233 34.9, 60.0 1.09
MOLF/EiJ f 46.5 12.8   11 3.86 0.275 24.9, 60.0 1.2
MOLF/EiJ m 52.6 8.82   4 4.41 0.168 42.5, 60.0 1.47
SJL/J f 35.7 14.7   12 4.25 0.412 15.2, 59.9 0.28
SJL/J m 39.6 12.7   12 3.65 0.32 22.1, 59.9 0.6
SM/J f 17.4 12.6   9 4.2 0.725 5.71, 43.7 -1.28
SM/J m 11.7 5.88   12 1.7 0.504 5.41, 21.0 -1.27
SPRET/EiJ m 51.8 8.95   12 2.58 0.173 33.6, 59.9 1.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 17.785 3.8625 25.3939 10.1761
129S1/SvImJ m 19.1392 3.8625 26.748 11.5303
A/J f 50.3833 5.4624 61.1439 39.6228
A/J m 38.3444 3.1537 44.5571 32.1318
AKR/J f 21.48 3.8625 29.0889 13.8711
AKR/J m 25.7583 3.8625 33.3672 18.1495
BALB/cByJ f 39.6933 3.4547 46.4989 32.8877
BALB/cByJ m 17.69 5.4624 28.4506 6.9294
BALB/cJ f 39.0429 3.576 46.0873 31.9984
BALB/cJ m 33.75 4.2311 42.0851 25.4149
C3H/HeJ f 42.49 4.2311 50.8251 34.1549
C3H/HeJ m 38.2778 4.46 47.0638 29.4918
C57BL/6J f 14.505 3.8625 22.1139 6.8961
C57BL/6J m 10.4008 3.8625 18.0097 2.792
CAST/EiJ f 30.583 4.2311 38.9181 22.2479
CAST/EiJ m 32.1455 4.0342 40.0927 24.1982
DBA/2J f 27.95 5.4624 38.7106 17.1894
DBA/2J m 11.1167 5.4624 21.8772 0.3561
FVB/NJ f 37.6833 5.4624 48.4439 26.9228
FVB/NJ m 46.9333 5.4624 57.6939 36.1728
MOLF/EiJ f 46.4727 4.0342 54.4199 38.5255
MOLF/EiJ m 52.6 6.69 65.779 39.421
SJL/J f 35.7 3.8625 43.3089 28.0911
SJL/J m 39.6 3.8625 47.2089 31.9911
SM/J f 17.3711 4.46 26.1571 8.5851
SM/J m 11.6758 3.8625 19.2847 4.067


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 18.4621 2.7312 23.8424 13.0818
A/J both 44.3639 3.1537 50.5765 38.1513
AKR/J both 23.6192 2.7312 28.9995 18.2389
BALB/cByJ both 28.6917 3.2316 35.0577 22.3256
BALB/cJ both 36.3964 2.7699 41.853 30.9398
C3H/HeJ both 40.3839 3.0739 46.4392 34.3286
C57BL/6J both 12.4529 2.7312 17.8332 7.0726
CAST/EiJ both 31.3642 2.9231 37.1225 25.6059
DBA/2J both 19.5333 3.8625 27.1422 11.9245
FVB/NJ both 42.3083 3.8625 49.9172 34.6995
MOLF/EiJ both 49.5364 3.9061 57.2312 41.8415
SJL/J both 37.65 2.7312 43.0303 32.2697
SM/J both 14.5235 2.95 20.3348 8.7121




  GWAS USING LINEAR MIXED MODELS