Phenotype measure:   Brown2   pct_pat_disc_d8

ID, description, units MPD:22552   pct_pat_disc_d8   visual discrimination, pattern discrimination, percent correct performance, 0.17 grating threshold, day 8   [%]
Data set, strains Brown2   inbred   14 strains     sex: both     age: 10-18wks
Procedure visual water box
Ontology mappings

  STRAIN COMPARISON PLOT
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Brown2 - visual discrimination, pattern discrimination, percent correct performance, 0.17 grating threshold, day 8



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains14 strains
Mean of the strain means62.3   % 59.5   %
Median of the strain means57.2   % 55.8   %
SD of the strain means± 16.1 ± 17.3
Coefficient of variation (CV)0.259 0.291
Min–max range of strain means45.0   –   87.5   % 37.5   –   95.8   %
Mean sample size per strain6.4   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 116.147 116.147 0.3859 0.5355
strain 11 26553.1519 2413.9229 8.0209 < 0.0001
sex:strain 11 4759.3191 432.6654 1.4376 0.1628
Residuals 137 41230.8531 300.9551


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 87.5 0.0   2   0.0 0.0 87.5, 87.5 1.56
129S1/SvImJ m 58.3 34.2   6 13.9 0.586 -0.07
A/J f 45.0 31.4   5 14.0 0.697 -1.07
A/J m 63.8 24.6   10 7.78 0.386 25.0, 100.0 0.25
AKR/J m 93.3 6.49   13 1.8 0.0695 87.5, 100.0 1.95
BALB/cByJ f 62.5 10.2   4 5.1 0.163 50.0, 75.0 0.01
BALB/cByJ m 64.6 14.6   6 5.97 0.226 50.0, 87.5 0.29
BALB/cJ f 46.4 11.9   7 4.49 0.256 25.0, 62.5 -0.98
BALB/cJ m 45.8 15.1   6 6.18 0.33 25.0, 62.5 -0.79
C3H/HeJ f 51.8 21.0   7 7.92 0.405 25.0, 75.0 -0.65
C3H/HeJ m 53.1 17.4   8 6.14 0.327 37.5, 75.0 -0.37
C57BL/6J f 79.2 20.4   6 8.33 0.258 50.0, 100.0 1.05
C57BL/6J m 67.5 16.9   10 5.34 0.25 50.0, 100.0 0.46
CAST/EiJ f 78.1 12.0   4 5.98 0.153 62.5, 87.5 0.98
CAST/EiJ m 54.8 16.2   6 6.61 0.296 37.5, 75.0 -0.27
DBA/2J f 86.2 9.22   10 2.92 0.107 75.0, 100.0 1.48
DBA/2J m 95.8 6.45   6 2.64 0.0674 87.5, 100.0 2.09
FVB/NJ f 56.2 13.1   6 5.35 0.233 37.5, 75.0 -0.38
FVB/NJ m 56.2 10.5   6 4.27 0.186 50.0, 75.0 -0.19
MOLF/EiJ f 46.2 10.3   10 3.25 0.223 25.0, 62.5 -1.0
MOLF/EiJ m 37.5 15.3   5 6.85 0.408 12.5, 50.0 -1.27
SJL/J f 50.0 0.0   6 0.0 0.0 50.0, 50.0 -0.76
SJL/J m 49.8 14.4   9 4.79 0.289 25.0, 71.4 -0.56
SM/J f 58.3 19.8   9 6.59 0.339 37.5, 100.0 -0.25
SM/J m 55.4 20.2   7 7.65 0.365 25.0, 87.5 -0.24
SPRET/EiJ m 37.7 16.4   10 5.18 0.435 12.5, 62.5 -1.26


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 87.5 12.2669 111.757 63.243
129S1/SvImJ m 58.3333 7.0823 72.3381 44.3285
A/J f 45.0 7.7583 60.3415 29.6585
A/J m 63.75 5.4859 74.5981 52.9019
BALB/cByJ f 62.5 8.674 79.6523 45.3477
BALB/cByJ m 64.5833 7.0823 78.5881 50.5785
BALB/cJ f 46.4286 6.5569 59.3945 33.4627
BALB/cJ m 45.8333 7.0823 59.8381 31.8285
C3H/HeJ f 51.7857 6.5569 64.7516 38.8198
C3H/HeJ m 53.125 6.1335 65.2535 40.9965
C57BL/6J f 79.1667 7.0823 93.1715 65.1619
C57BL/6J m 67.5 5.4859 78.3481 56.6519
CAST/EiJ f 78.125 8.674 95.2773 60.9727
CAST/EiJ m 54.75 7.0823 68.7548 40.7452
DBA/2J f 86.25 5.4859 97.0981 75.4019
DBA/2J m 95.8333 7.0823 109.8381 81.8285
FVB/NJ f 56.25 7.0823 70.2548 42.2452
FVB/NJ m 56.25 7.0823 70.2548 42.2452
MOLF/EiJ f 46.25 5.4859 57.0981 35.4019
MOLF/EiJ m 37.5 7.7583 52.8415 22.1585
SJL/J f 50.0 7.0823 64.0048 35.9952
SJL/J m 49.7889 5.7827 61.2238 38.354
SM/J f 58.3333 5.7827 69.7682 46.8985
SM/J m 55.3571 6.5569 68.3231 42.3912


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 72.9167 7.0823 86.9215 58.9119
A/J both 54.375 4.751 63.7697 44.9803
BALB/cByJ both 63.5417 5.5991 74.6134 52.4699
BALB/cJ both 46.131 4.8258 55.6736 36.5883
C3H/HeJ both 52.4554 4.4892 61.3325 43.5782
C57BL/6J both 73.3333 4.4792 82.1907 64.4759
CAST/EiJ both 66.4375 5.5991 77.5093 55.3657
DBA/2J both 91.0417 4.4792 99.8991 82.1843
FVB/NJ both 56.25 5.008 66.1529 46.3471
MOLF/EiJ both 41.875 4.751 51.2697 32.4803
SJL/J both 49.8944 4.5716 58.9345 40.8544
SM/J both 56.8452 4.3713 65.4892 48.2013




  GWAS USING LINEAR MIXED MODELS