Phenotype measure:   Brown2   probe_corr_pct


  STRAIN COMPARISON PLOT
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Brown2 - probe trial percent correct quadrant



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested13 strains13 strains
Mean of the strain means27.2   % 29.0   %
Median of the strain means26.6   % 29.4   %
SD of the strain means± 5.55 ± 3.30
Coefficient of variation (CV)0.204 0.114
Min–max range of strain means15.7   –   36.8   % 21.8   –   34.5   %
Mean sample size per strain11.0   mice 10.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 27.5442 27.5442 0.1216 0.7276
strain 12 3911.7186 325.9766 1.439 0.1482
sex:strain 12 1687.3083 140.609 0.6207 0.824
Residuals 259 58672.1971 226.5336


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 27.1 9.43   12 2.72 0.348 7.03, 41.1 -0.01
129S1/SvImJ m 33.3 22.2   12 6.4 0.667 1.02, 78.0 1.31
A/J f 15.7 20.8   12 6.0 1.33 -2.06
A/J m 21.8 20.4   18 4.8 0.933 -2.18
AKR/J f 29.9 11.1   12 3.19 0.37 14.9, 53.3 0.49
AKR/J m 24.9 6.94   12 2.0 0.278 16.6, 41.3 -1.24
BALB/cByJ f 30.6 20.2   21 4.42 0.661 0.62
BALB/cByJ m 31.0 14.8   12 4.26 0.476 7.35, 68.6 0.61
BALB/cJ f 24.1 10.9   14 2.91 0.451 3.89, 48.2 -0.55
BALB/cJ m 29.4 13.0   10 4.12 0.442 5.87, 56.6 0.13
C3H/HeJ f 26.2 11.8   10 3.73 0.45 3.23, 46.2 -0.17
C3H/HeJ m 28.4 15.7   10 4.97 0.553 -0.18
C57BL/6J f 36.8 25.6   11 7.71 0.695 5.51, 86.4 1.74
C57BL/6J m 30.3 19.4   12 5.59 0.638 1.73, 71.8 0.4
CAST/EiJ f 21.6 8.46   3 4.88 0.391 14.9, 31.1 -1.0
CAST/EiJ m 34.5 2.07   5 0.926 0.0601 31.1, 36.3 1.68
DBA/2J f 30.3 7.38   12 2.13 0.244 18.1, 43.5 0.57
DBA/2J m 29.6 7.05   11 2.12 0.238 16.5, 38.3 0.19
FVB/NJ f 25.6 4.01   11 1.21 0.156 18.9, 33.0 -0.28
FVB/NJ m 29.9 5.92   12 1.71 0.198 19.3, 37.6 0.28
MOLF/EiJ f 34.9 18.2   12 5.27 0.523 4.77, 58.8 1.4
MOLF/EiJ m 28.5 19.3   11 5.81 0.676 -0.14
SJL/J f 26.6 7.78   12 2.25 0.292 6.68, 39.4 -0.1
SJL/J m 26.8 7.86   9 2.62 0.293 16.7, 42.5 -0.66
SM/J f 23.6 12.6   3 7.28 0.534 16.3, 38.2 -0.64
SM/J m 28.3 5.44   6 2.22 0.192 23.1, 37.6 -0.21


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 27.0942 4.3449 35.6499 18.5384
129S1/SvImJ m 33.2625 4.3449 41.8182 24.7068
A/J f 15.6613 4.3449 24.2171 7.1056
A/J m 21.8378 3.5476 28.8235 14.852
AKR/J f 29.8917 4.3449 38.4474 21.3359
AKR/J m 24.9417 4.3449 33.4974 16.3859
BALB/cByJ f 30.6343 3.2844 37.1018 24.1667
BALB/cByJ m 31.0292 4.3449 39.5849 22.4734
BALB/cJ f 24.1493 4.0226 32.0704 16.2282
BALB/cJ m 29.437 4.7596 38.8094 20.0646
C3H/HeJ f 26.223 4.7596 35.5954 16.8506
C3H/HeJ m 28.42 4.7596 37.7924 19.0476
C57BL/6J f 36.7827 4.5381 45.7189 27.8465
C57BL/6J m 30.335 4.3449 38.8907 21.7793
CAST/EiJ f 21.6 8.6897 38.7115 4.4885
CAST/EiJ m 34.48 6.731 47.7345 21.2255
DBA/2J f 30.2917 4.3449 38.8474 21.7359
DBA/2J m 29.5727 4.5381 38.5089 20.6365
FVB/NJ f 25.6455 4.5381 34.5816 16.7093
FVB/NJ m 29.9167 4.3449 38.4724 21.3609
MOLF/EiJ f 34.8975 4.3449 43.4532 26.3418
MOLF/EiJ m 28.5136 4.5381 37.4498 19.5775
SJL/J f 26.6483 4.3449 35.2041 18.0926
SJL/J m 26.7667 5.017 36.646 16.8873
SM/J f 23.6333 8.6897 40.7448 6.5218
SM/J m 28.3167 6.1446 40.4163 16.217


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 30.1783 3.0723 36.2282 24.1285
A/J both 18.7496 2.8046 24.2723 13.2268
AKR/J both 27.4167 3.0723 33.4665 21.3668
BALB/cByJ both 30.8317 2.7233 36.1943 25.4691
BALB/cJ both 26.7931 3.1159 32.9288 20.6575
C3H/HeJ both 27.3215 3.3655 33.9488 20.6942
C57BL/6J both 33.5589 3.1413 39.7447 27.3731
CAST/EiJ both 28.04 5.4959 38.8623 17.2177
DBA/2J both 29.9322 3.1413 36.118 23.7464
FVB/NJ both 27.7811 3.1413 33.9669 21.5953
MOLF/EiJ both 31.7056 3.1413 37.8914 25.5198
SJL/J both 26.7075 3.3184 33.2421 20.1729
SM/J both 25.975 5.3213 36.4536 15.4964




  GWAS USING LINEAR MIXED MODELS