Phenotype measure:   Brown2   MWMprobe_corr_pct


  STRAIN COMPARISON PLOT
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Brown2 - probe trial percent time, correct quadrant



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested13 strains14 strains
Mean of the strain means30.9   % 32.0   %
Median of the strain means28.8   % 28.5   %
SD of the strain means± 9.39 ± 7.83
Coefficient of variation (CV)0.304 0.245
Min–max range of strain means19.0   –   50.4   % 22.3   –   46.0   %
Mean sample size per strain10.3   mice 9.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 52.8527 52.8527 0.2177 0.6413
strain 12 14164.5287 1180.3774 4.861 < 0.0001
sex:strain 12 2536.6073 211.3839 0.8705 0.5777
Residuals 237 57549.6295 242.8254


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 42.7 19.8   12 5.7 0.463 1.25
129S1/SvImJ m 37.2 17.7   12 5.12 0.477 6.47, 62.0 0.66
A/J f 20.1 13.2   6 5.38 0.655 8.24, 45.0 -1.15
A/J m 24.1 15.1   18 3.56 0.628 -1.01
AKR/J f 28.8 15.0   12 4.32 0.52 -0.23
AKR/J m 25.3 9.56   12 2.76 0.377 6.46, 46.0 -0.86
BALB/cByJ f 24.0 20.3   15 5.24 0.847 -0.74
BALB/cByJ m 27.8 14.7   6 6.01 0.529 -0.54
BALB/cJ f 19.0 17.6   14 4.71 0.927 -1.27
BALB/cJ m 27.5 15.2   10 4.79 0.55 9.47, 56.4 -0.57
C3H/HeJ f 22.6 11.7   10 3.69 0.518 8.32, 49.3 -0.89
C3H/HeJ m 24.1 17.3   9 5.76 0.717 5.61, 63.1 -1.01
C57BL/6J f 40.7 10.4   12 3.01 0.256 29.1, 61.0 1.04
C57BL/6J m 41.2 13.9   12 4.01 0.337 14.5, 58.4 1.17
CAST/EiJ f 27.2 15.2   9 5.08 0.561 2.61, 53.6 -0.4
CAST/EiJ m 29.1 11.9   10 3.76 0.409 8.36, 47.1 -0.37
DBA/2J f 37.1 7.36   6 3.01 0.198 23.1, 44.6 0.66
DBA/2J m 46.0 21.0   6 8.59 0.457 20.2, 75.4 1.79
FVB/NJ f 50.4 14.6   6 5.96 0.29 37.5, 78.5 2.07
FVB/NJ m 40.5 18.7   6 7.63 0.462 14.7, 60.9 1.09
MOLF/EiJ f 28.0 16.6   12 4.79 0.593 6.86, 64.7 -0.31
MOLF/EiJ m 40.2 21.2   4 10.6 0.527 14.1, 60.8 1.05
SJL/J f 31.9 18.1   12 5.23 0.567 12.1, 71.4 0.1
SJL/J m 22.3 14.1   12 4.08 0.635 4.58, 45.7 -1.24
SM/J f 29.4 15.8   8 5.59 0.538 8.11, 50.1 -0.16
SM/J m 35.8 10.9   12 3.16 0.305 17.0, 58.8 0.49
SPRET/EiJ m 26.9 5.77   11 1.74 0.215 15.4, 36.0 -0.65


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 42.6917 4.4984 51.5536 33.8297
129S1/SvImJ m 37.1892 4.4984 46.0511 28.3272
A/J f 20.1217 6.3617 32.6543 7.589
A/J m 24.0602 3.6729 31.296 16.8245
AKR/J f 28.7583 4.4984 37.6203 19.8964
AKR/J m 25.3467 4.4984 34.2086 16.4847
BALB/cByJ f 23.9521 4.0235 31.8785 16.0258
BALB/cByJ m 27.8333 6.3617 40.366 15.3007
BALB/cJ f 18.9964 4.1647 27.201 10.7919
BALB/cJ m 27.547 4.9277 37.2548 17.8392
C3H/HeJ f 22.572 4.9277 32.2798 12.8642
C3H/HeJ m 24.0956 5.1943 34.3284 13.8627
C57BL/6J f 40.6833 4.4984 49.5453 31.8214
C57BL/6J m 41.2083 4.4984 50.0703 32.3464
CAST/EiJ f 27.1567 5.1943 37.3895 16.9238
CAST/EiJ m 29.076 4.9277 38.7838 19.3682
DBA/2J f 37.1 6.3617 49.6327 24.5673
DBA/2J m 46.0333 6.3617 58.566 33.5007
FVB/NJ f 50.3833 6.3617 62.916 37.8507
FVB/NJ m 40.4667 6.3617 52.9993 27.934
MOLF/EiJ f 27.98 4.4984 36.8419 19.1181
MOLF/EiJ m 40.25 7.7914 55.5993 24.9007
SJL/J f 31.9333 4.4984 40.7953 23.0714
SJL/J m 22.2717 4.4984 31.1336 13.4097
SM/J f 29.375 5.5094 40.2286 18.5214
SM/J m 35.8417 4.4984 44.7036 26.9797


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 39.9404 3.1808 46.2067 33.6741
A/J both 22.0909 3.6729 29.3267 14.8552
AKR/J both 27.0525 3.1808 33.3188 20.7862
BALB/cByJ both 25.8927 3.7636 33.3072 18.4783
BALB/cJ both 23.2717 3.226 29.6269 16.9165
C3H/HeJ both 23.3338 3.5799 30.3863 16.2813
C57BL/6J both 40.9458 3.1808 47.2122 34.6795
CAST/EiJ both 28.1163 3.5799 35.1689 21.0638
DBA/2J both 41.5667 4.4984 50.4286 32.7047
FVB/NJ both 45.425 4.4984 54.2869 36.5631
MOLF/EiJ both 34.115 4.4984 42.9769 25.2531
SJL/J both 27.1025 3.1808 33.3688 20.8362
SM/J both 32.6083 3.5563 39.6143 25.6024




  GWAS USING LINEAR MIXED MODELS