MPD: Phenotype measures mapped to MA:0002444, visual system

Phenotype measures associated with ontology term
MA:0002444 'visual system'

All measures in this list are mapped to the ontology descendants of MA:0002444. None are mapped to MA:0002444 directly.

MA:0000261 eye
MA:0000262 eye anterior chamber
MA:0000266 cornea
MA:0000268 eyelid
MA:0000273 iris
MA:0000275 lens
MA:0000276 retina
MA:0000278 optic disc
MA:0001283 hyaloid vascular plexus
MA:0001292 pupil
MA:0002462 vitreous body

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Chang1:1	Chang1	electroretinography	(none)	a-wave amplitude of rod photoreceptors (ERG) [µV] rod_Awave 15701	inbred	16	both	>7wks	N=15	2008

Chang1:2	Chang1	electroretinography	(none)	b-wave amplitude of rod photoreceptors (ERG) [µV] rod_Bwave 15702	inbred	17	both	>7wks	N=15	2008

Chang1:5	Chang1	electroretinography	(none)	b-wave amplitude of cone photoreceptors (ERG) [µV] cone_Bwave 15705	inbred	16	both	>7wks	N=14	2008

Chang1:6	Chang1	organ dimensions	(none)	eye diameter [mm] diameter 15706	inbred	17	both	>7wks	N=14	2008

Chang2:1	Chang2	slit lamp	(none)	eyeless [frequency rate] eye_dysmorpho 42701	B6.PWD consomic w/par	28	both	44-61wks	N=9	2012

Chang2:2	Chang2	slit lamp	(none)	corneal opacity [frequency rate] corneal_opacity 42702	B6.PWD consomic w/par	28	both	44-61wks	N=9	2012

Chang2:3	Chang2	slit lamp	(none)	punctate cataract [frequency rate] cataract_punctate 42703	B6.PWD consomic w/par	28	both	44-61wks	N=9	2012

Chang2:4	Chang2	ophthalmoscopy	(none)	retinal spots (multifocal circumscribed areas of hypopigmentation) [frequency rate] retinal_spots 42704	B6.PWD consomic w/par	28	both	44-61wks	N=9	2012

GMC03:14	GMC03	observation (SHIRPA)	(none)	palebral closure (0=open, 1=closed) [score] palebral_closure 55231	inbred w/CC8	8	both	8-10wks	N=17	2018

GMC03:15	GMC03	observation (SHIRPA)	(none)	lacrimation (0=absent, 1=present) [score] lacrimation 55232	inbred w/CC8	8	both	8-10wks	N=17	2018

GMC03:23	GMC03	observation (SHIRPA)	(none)	corneal reflex (0=present, 1=absent) [score] cornea_reflex 55253	inbred w/CC8	8	both	8-10wks	N=17	2018

GMC14:21	GMC14	organ dimensions	(none)	eye axial length [mm] eye_length 56321 left eye right eye	inbred w/CC8	8	both	15-16wks	N=13	2018

GMC14:31	GMC14	Scheimpflug imaging	(none)	minimal density value of lens, Scheimpflug imaging [%] lens_min_density 56331 left eye right eye	inbred w/CC8	8	both	15-16wks	N=13	2018

GMC14:33	GMC14	Scheimpflug imaging	(none)	maximal density value of lens, Scheimpflug imaging [%] lens_max_density 56333 left eye right eye	inbred w/CC8	8	both	15-16wks	N=13	2018

GMC14:35	GMC14	Scheimpflug imaging	(none)	mean density value of lens, Scheimpflug imaging [%] lens_mean_density 56335 left eye right eye	inbred w/CC8	8	both	15-16wks	N=13	2018

GMC14:41	GMC14	computed tomography	(none)	number of main vessels in fundus [n] fundus_vessels 56341 left eye right eye	inbred w/CC8	8	both	15-17wks	N=12	2018

GMC14:51	GMC14	computed tomography	(none)	retinal thickness, optical coherence tomography [µm] retinal_thickness 56351 left eye right eye	inbred w/CC8	8	both	15-17wks	N=13	2018

GMC14:61	GMC14	virtual optomotor	(none)	threshold of spatial frequency (number of cycles that fall within one degree of visual angle), virtual drum [n/deg] spatial_freq 56361	inbred w/CC8	3	both	14-16wks	N=16	2018

Hawes1:9	Hawes1	slit lamp	(none)	corneal opacity, focal [frequency rate] cornea_focal 26709	inbred w/CC7	41	both	6-7wks	N=10	2008

Hawes1:10	Hawes1	slit lamp	(none)	corneal opacity, diffuse [frequency rate] cornea_diffuse 26710	inbred w/CC7	41	both	6-7wks	N=10	2008

Hawes1:11	Hawes1	slit lamp	(none)	cornea-lens synechia [frequency rate] cornea_lens_adhesion 26711	inbred w/CC7	41	both	6-7wks	N=10	2008

Hawes1:12	Hawes1	slit lamp	(none)	iris coloboma [frequency rate] iris_coloboma 26712	inbred w/CC7	41	both	6-7wks	N=10	2008

Hawes1:13	Hawes1	slit lamp	(none)	iris transillumination defect [frequency rate] iris_trans_defect 26713	inbred w/CC7	41	both	6-7wks	N=10	2008

Hawes1:14	Hawes1	slit lamp	(none)	iris synechia [frequency rate] iris_adhesion 26714	inbred w/CC7	41	both	6-7wks	N=10	2008

Hawes1:15	Hawes1	slit lamp	(none)	nuclear cataract [frequency rate] cat_nuclear 26715	inbred w/CC7	40	both	6-7wks	N=10	2008

Hawes1:17	Hawes1	slit lamp	(none)	suture cataract [frequency rate] cat_suture 26717	inbred w/CC7	40	both	6-7wks	N=10	2008

Hawes1:18	Hawes1	slit lamp	(none)	punctate or snowflake cataract [frequency rate] cat_punctate 26718	inbred w/CC7	40	both	6-7wks	N=10	2008

Hawes1:19	Hawes1	ophthalmoscopy	(none)	retinal coloboma [frequency rate] ret_coloboma 26719	inbred w/CC7	40	both	6-7wks	N=10	2008

Hawes1:20	Hawes1	ophthalmoscopy	(none)	retinal hypopigmentation [frequency rate] ret_hypopig 26720	inbred w/CC7	40	both	6-7wks	N=10	2008

Hawes1:21	Hawes1	ophthalmoscopy	(none)	retinal degeneration [frequency rate] ret_degen 26721	inbred w/CC7	40	both	6-7wks	N=10	2008

Hawes1:22	Hawes1	ophthalmoscopy	(none)	optic cup, changes [frequency rate] optic_cup 26722	inbred w/CC7	40	both	6-7wks	N=10	2008

JaxKOMP-EAP:75	JaxKOMP-EAP	observation (SHIRPA)	(none)	eye morphology eyes 100369 categorical	KOMP		both	9wks		2021

JaxKOMP-EAP:275	JaxKOMP-EAP	ophthalmoscopy	(none)	eyes (present, absent) eye 100600 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:276	JaxKOMP-EAP	ophthalmoscopy	(none)	bulging eye bulging_eye 100601 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:277	JaxKOMP-EAP	ophthalmoscopy	(none)	eye hemorrhage or blood presence eye_hemorrhage eye_hemorrhage_or_blood_presence 100602 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:278	JaxKOMP-EAP	ophthalmoscopy	(none)	eyelid morphology eyelid_morphology 100603 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:279	JaxKOMP-EAP	ophthalmoscopy	(none)	eye closure eye_closure 100604 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:280	JaxKOMP-EAP	ophthalmoscopy	(none)	narrow eye opening narrow_eye_opening 100605 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:281	JaxKOMP-EAP	ophthalmoscopy	(none)	cornea cornea 100606 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:282	JaxKOMP-EAP	ophthalmoscopy	(none)	irispupil irispupil 100607 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:283	JaxKOMP-EAP	ophthalmoscopy	(none)	pupil position pupil_position 100608 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:284	JaxKOMP-EAP	ophthalmoscopy	(none)	pupil shape pupil_shape 100609 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:285	JaxKOMP-EAP	ophthalmoscopy	(none)	pupil dilation pupil_dilation 100610 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:286	JaxKOMP-EAP	ophthalmoscopy	(none)	pupil light response pupil_light_response 100611 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:287	JaxKOMP-EAP	ophthalmoscopy	(none)	iris pigmentation iris_pigmentation 100612 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:288	JaxKOMP-EAP	slit lamp	(none)	lens lens 100613 categorical	KOMP	2018	both	14wks		2021

JaxKOMP-EAP:289	JaxKOMP-EAP	slit lamp	(none)	lens opacity lens_opacity 100614 categorical	KOMP	2024	both	14wks		2021

JaxKOMP-EAP:290	JaxKOMP-EAP	slit lamp	(none)	fusion between cornea and lens fusion_cornea_lens fusion_between_cornea_and_lens 100615 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:291	JaxKOMP-EAP	slit lamp	(none)	synechia synechia 100616 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:292	JaxKOMP-EAP	ophthalmoscopy	(none)	retina retina 100617 categorical	KOMP	2013	both	14wks		2021

JaxKOMP-EAP:293	JaxKOMP-EAP	ophthalmoscopy	(none)	retinal pigmentation retinal_pigmentation 100618 categorical	KOMP	2010	both	14wks		2021

JaxKOMP-EAP:294	JaxKOMP-EAP	ophthalmoscopy	(none)	retinal structure retinal_structure 100619 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:295	JaxKOMP-EAP	ophthalmoscopy	(none)	optic disc optic_disc 100620 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:296	JaxKOMP-EAP	ophthalmoscopy	(none)	retinal blood vessels retinal_blood_vessels 100621 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:297	JaxKOMP-EAP	ophthalmoscopy	(none)	persistence of hyaloid vascular system hyaloid_vascular_system persistence_of_hyaloid_vascular_system 100622 categorical	KOMP	2014	both	14wks		2021

JaxKOMP-EAP:298	JaxKOMP-EAP	ophthalmoscopy	(none)	retinal blood vessels pattern retinal_blood_vessels_pattern 100623 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:299	JaxKOMP-EAP	ophthalmoscopy	(none)	retinal blood vessels structure retinal_blood_vessels_structure 100625 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:300	JaxKOMP-EAP	slit lamp	(none)	cornea opacity cornea_opacity 100627 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:301	JaxKOMP-EAP	slit lamp	(none)	cornea vascularization cornea_vascularization 100628 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:302	JaxKOMP-EAP	slit lamp	(none)	corneal scleralization corneal_scleralization 100629 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:303	JaxKOMP-EAP	slit lamp	(none)	corneal deposits corneal_deposits 100630 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:304	JaxKOMP-EAP	slit lamp	(none)	iris transillumination iris_transillumination 100631 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:305	JaxKOMP-EAP	slit lamp	(none)	vitreous vitreous 100632 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:306	JaxKOMP-EAP	slit lamp	(none)	corneal mineralization corneal_mineralization 100633 categorical	KOMP	2013	both	14wks		2021

JaxKOMP-EAP:307	JaxKOMP-EAP	slit lamp	(none)	corneal ulcer corneal_ulcer 100634 categorical	KOMP	2013	both	14wks		2021

JaxKOMP-EAP:308	JaxKOMP-EAP	slit lamp	(none)	lacrimation lacrimation 100635 categorical	KOMP	2013	both	14wks		2021

JaxKOMP-EAP:309	JaxKOMP-EAP	slit lamp	(none)	anterior chamber depth anterior_chamber_depth 100636 categorical	KOMP	1987	both	14wks		2021

JaxKOMP-EAP:362	JaxKOMP-EAP	electroretinography	(none)	blind eyes blind 100312 categorical left right	KOMP	495	both	16wks		2016

JaxKOMP-EAP:364	JaxKOMP-EAP	electroretinography	(none)	b-wave amplitude of cone photoreceptors [µV] cone_b_amplitude cone_b_wave_amplitude 100314 left right	KOMP	351	both	16wks	N=3	2016

JaxKOMP-EAP:366	JaxKOMP-EAP	electroretinography	(none)	b-wave implicit time of rod photoreceptors (interval from onset of stimulus to peak of the wave) [ms] cone_b_time cone_b_wave_implicit_time 100316 left right	KOMP	338	both	16wks	N=3	2016

JaxKOMP-EAP:368	JaxKOMP-EAP	electroretinography	(none)	a-wave amplitude of rod photoreceptors [µV] rod_a_amplitude rod_a_wave_amplitude 100318 left right	KOMP	356	both	16wks	N=3	2016

JaxKOMP-EAP:370	JaxKOMP-EAP	electroretinography	(none)	rod a wave implicit time rod_a_time rod_a_wave_implicit_time 100320 left right	KOMP	330	both	16wks	N=3	2016

JaxKOMP-EAP:372	JaxKOMP-EAP	electroretinography	(none)	b-wave amplitude of rod photoreceptors [µV] rod_b_amplitude rod_b_wave_amplitude 100322 left right	KOMP	357	both	16wks	N=3	2016

JaxKOMP-EAP:374	JaxKOMP-EAP	electroretinography	(none)	rod b wave implicit time rod_b_time rod_b_wave_implicit_time 100324 left right	KOMP	346	both	16wks	N=3	2016

JaxKOMP-LAP:64	JaxKOMP-LAP	observation (SHIRPA)	(none)	eye morphology eyes 101369 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:248	JaxKOMP-LAP	ophthalmoscopy	(none)	eyes (present, absent) eye 101600 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:249	JaxKOMP-LAP	ophthalmoscopy	(none)	bulging eye bulging_eye 101601 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:250	JaxKOMP-LAP	ophthalmoscopy	(none)	eye hemorrhage or blood presence eye_hemorrhage_or_blood_presence 101602 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:251	JaxKOMP-LAP	ophthalmoscopy	(none)	eyelid morphology eyelid_morphology 101603 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:252	JaxKOMP-LAP	ophthalmoscopy	(none)	eye closure eye_closure 101604 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:253	JaxKOMP-LAP	ophthalmoscopy	(none)	narrow eye opening narrow_eye_opening 101605 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:254	JaxKOMP-LAP	ophthalmoscopy	(none)	cornea cornea 101606 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:255	JaxKOMP-LAP	ophthalmoscopy	(none)	irispupil irispupil 101607 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:256	JaxKOMP-LAP	ophthalmoscopy	(none)	pupil position pupil_position 101608 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:257	JaxKOMP-LAP	ophthalmoscopy	(none)	pupil shape pupil_shape 101609 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:258	JaxKOMP-LAP	ophthalmoscopy	(none)	pupil dilation pupil_dilation 101610 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:259	JaxKOMP-LAP	ophthalmoscopy	(none)	pupil light response pupil_light_response 101611 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:260	JaxKOMP-LAP	ophthalmoscopy	(none)	iris pigmentation iris_pigmentation 101612 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:261	JaxKOMP-LAP	slit lamp	(none)	lens lens 101613 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:262	JaxKOMP-LAP	slit lamp	(none)	lens opacity lens_opacity 101614 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:263	JaxKOMP-LAP	slit lamp	(none)	fusion between cornea and lens fusion_between_cornea_and_lens 101615 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:264	JaxKOMP-LAP	slit lamp	(none)	synechia synechia 101616 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:265	JaxKOMP-LAP	ophthalmoscopy	(none)	retina retina 101617 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:266	JaxKOMP-LAP	ophthalmoscopy	(none)	retinal pigmentation retinal_pigmentation 101618 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:267	JaxKOMP-LAP	ophthalmoscopy	(none)	retinal structure retinal_structure 101619 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:268	JaxKOMP-LAP	ophthalmoscopy	(none)	optic disc optic_disc 101620 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:269	JaxKOMP-LAP	ophthalmoscopy	(none)	retinal blood vessels retinal_blood_vessels 101621 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:270	JaxKOMP-LAP	ophthalmoscopy	(none)	persistence of hyaloid vascular system persistence_of_hyaloid_vascular_system 101622 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:271	JaxKOMP-LAP	ophthalmoscopy	(none)	retinal blood vessels pattern retinal_blood_vessels_pattern 101623 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:272	JaxKOMP-LAP	ophthalmoscopy	(none)	retinal blood vessels structure retinal_blood_vessels_structure 101625 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:273	JaxKOMP-LAP	slit lamp	(none)	cornea opacity cornea_opacity 101627 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:274	JaxKOMP-LAP	slit lamp	(none)	cornea vascularization cornea_vascularization 101628 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:275	JaxKOMP-LAP	slit lamp	(none)	corneal scleralization corneal_scleralization 101629 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:276	JaxKOMP-LAP	slit lamp	(none)	corneal deposits corneal_deposits 101630 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:277	JaxKOMP-LAP	slit lamp	(none)	iris transillumination iris_transillumination 101631 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:278	JaxKOMP-LAP	slit lamp	(none)	vitreous vitreous 101632 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:279	JaxKOMP-LAP	slit lamp	(none)	corneal mineralization corneal_mineralization 101633 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:280	JaxKOMP-LAP	slit lamp	(none)	corneal ulcer corneal_ulcer 101634 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:281	JaxKOMP-LAP	slit lamp	(none)	lacrimation lacrimation 101635 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:282	JaxKOMP-LAP	slit lamp	(none)	anterior chamber depth anterior_chamber_depth 101636 categorical	KOMP	150	both	72-79wks		2021

Jaxpheno7:21	Jaxpheno7	observation (SHIRPA)	(none)	eyelid (palpebral) fissure presentation in arena (score 0-2) [score] palpebral_fissure 34921	inbred	6	m	10wks	N=8	2010

Jaxpheno7:26	Jaxpheno7	observation (SHIRPA)	(none)	presence of lacrimal fluid (tears) around eyes during supine restraint (score 0-1) [score] lacrimation 34926	inbred	6	m	10wks	N=8	2010

Jaxpheno7:36	Jaxpheno7	observation (SHIRPA)	(none)	eye-blink response to corneal stimulation on horizontal wire-grid (score 0-2) [score] corneal_reflex 34936	inbred	6	m	10wks	N=8	2010

Kiernan1:2	Kiernan1	slit lamp	(none)	status of eye (1 = affected; 0 = unaffected) [score] eye 20002	QTL population		f	not specified	N=90	2007

Lake2:20	Lake2	observation (SHIRPA)	(none)	eyelid (palpebral) fissure presentation in arena (score 0-2) [score] palpebral_fissure 21723	B6.A consomic w/par	23	both	8wks	N=8	2005

Lake2:25	Lake2	observation (SHIRPA)	(none)	presence of lacrimal fluid (tears) around eyes during supine restraint (score 0-1) [score] lacrimation 21728	B6.A consomic w/par	23	both	8wks	N=8	2005

Lake2:30	Lake2	observation (SHIRPA)	(none)	eye-blink response to corneal stimulation on horizontal wire-grid (score 0-2) [score] corneal_reflex 21733	B6.A consomic w/par	23	both	8wks	N=8	2005

Puk1:1	Puk1	organ dimensions	(none)	eye axial length [mm] axial_length 22201 left eye right eye	inbred	4	both	13wks	N=8	2006

Puk1:3	Puk1	organ dimensions	(none)	corneal thickness [µm] corneal_thickness 22203 left eye right eye	inbred	4	both	13wks	N=8	2006

Puk1:5	Puk1	organ dimensions	(none)	depth of anterior eye chamber [mm] ant_chamber_depth 22205 left eye right eye	inbred	4	both	13wks	N=8	2006

Puk1:7	Puk1	organ dimensions	(none)	lens thickness [mm] lens 22207 left eye right eye	inbred	4	both	13wks	N=7	2006

Filter Table Results