Studies involving BXD RI panel

List BXD strains


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Data set Procedure What's in this data set Panel Sex Age (weeks) Year
CGD-MDA2 genotyping SNP profiling, 470,000+ genomic locations, 1-19,X,Y,MT. None SNPs BXD w/par  (92) m 2014
Chesler1 nociception assay Tail clip, Von Frey, Hargreaves, tail withdrawal, hot plate. None HP BXD  (61) both 7-15wks 2010
DiCurzio1 body weight Body weight None BW BXD w/par  (66) both 10wks 2010
DiCurzio1 histopathology Adrenal glands. total width, medulla width, cortex zona thicknesses, glomerulosa, intermedia, fasciculata, reticularis, x-zone None BXD w/par  (66) both 10wks 2010
DiCurzio1 organ weights Adrenal weight. None None BXD w/par  (66) both 10wks 2010
Donahue14 colony observation Reproduction, fecundity. Litter size, litter interval, percent weaned, pup sexes. None None BXD  (42) f 3-60wks 2011
Donahue17 colony observation Reproduction, fecundity. Litter size, litter interval, percent weaned, pup sexes. None None BXD  (30) f 3-57wks 2011
HMDPpheno1 DXA Bone mineral density (whole body, femur, spine). None BMD HMDP w/par  (96) m 16wks 2011
HMDPpheno10 metabolite quantification Liver metabolic profiling. Molecular measures of nucleotides, peptides. 16h fast. None None HMDP w/par  (106) m 16wks 2014
HMDPpheno2 lipid profile Cholesterol, HDL, non-HDL, triglycerides, free fatty acids. 16h fast, plasma. None CHOL, FFA, TG HMDP w/par  (99) m 16wks 2010
HMDPpheno2 NMR Percent fat. None None HMDP w/par  (99) m 16wks 2010
HMDPpheno3 tail cuff Heart rate and blood pressure. Conscious mice. None BP, HR HMDP w/par  (58) m 9-10wks 2012
HMDPpheno4 fear conditioning test Contextual fear, cued fear. None FC HMDP w/par  (94) m 10wks 2011
HMDPpheno5 complete blood count Hematology. cell counts, white cells, lymphocytes, monocytes, granulocytes, red cell parameters, hemoglobin, hematocrit reticulocytes, platelets CBC, RBC, WBC, CHCM, HCT, HGB, LYM, MCH, MCHC, MONO, MPV, PLT, RET, RETIC HMDP w/par  (83) m 16wks 2013
HMDPpheno6 metabolite quantification Liver metabolic profiling. Molecular measures of amino acids. 16h fast. None None HMDP w/par  (106) m 16wks 2014
HMDPpheno7 metabolite quantification Liver metabolic profiling. Molecular measures of carbs, cofactors, vitamins, energy, xenobiotics. 16h fast. None None HMDP w/par  (106) m 16wks 2014
HMDPpheno8 metabolite quantification Liver metabolic profiling. Molecular measures of lipids (non-lysolipids). 16h fast. None None HMDP w/par  (106) m 16wks 2014
HMDPpheno9 metabolite quantification Liver metabolic profiling. Molecular measures of lipids (lysolipids). 16h fast. None None HMDP w/par  (106) m 16wks 2014
Jentsch1 operant conditioning chamber Reversal learning test. Impulsivity, acquisition, reversal, conditioning. Performance and latency. None None BXD w/par  (53) m 17wks 2011
Jentsch2 operant conditioning chamber
with cocaine
Intravenous self-administration of cocaine via activation of levers, and locomotor activity. inhibitory control, conditioning None BXD  (4) both 8-17wks 2013
Rosen1 histopathology Midsagittal area of corpus callosum. None None BXD w/par  (78) both various 2012
Rosen2 histopathology Lateral septal nucleus volume. None None BXD w/par  (71) both various 2012
Schalkwyk2 RNA expression profiling Hippocampal microRNA expression. Normalized data. miR-15b, miR-31, miR-34c, miR-212, miR301a. RT-PCR. miR BXD w/par  (26) m 15-16wks 2012
Schughart2 body weight
with influenza A (H1N1) virus
Influenza A (H1N1) virus vs. baseline. Several timepoints.. None BW, flu BXD w/par  (56) f 9-18wks 2012
Schughart2 health assessment
with influenza A (H1N1) virus
Survival rate, susceptibility, influenza A (H1N1) virus. None flu BXD w/par  (56) f 9-18wks 2012
Spijker1 acoustic startle test Acoustic startle response, prepulse inhibition. None ASR, PPI BXD w/par  (45) m 8wks 2011
Spijker1 choice serial reaction time task Choice serial reaction time task. Impulsivity, attention, cognitive flexibility behavior. None None BXD w/par  (45) m 8wks 2011