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Examples
Phenotype measures associated with
ontology
term
VT:0002208 'germ cell morphology trait'
List studies
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Navigate ontologies
All measures in this list are mapped to the
ontology descendants
of VT:0002208. None are mapped to VT:0002208 directly.
VT:0002673 sperm quantity
VT:0005431 oocyte quantity
VT:0010042 sperm morphology trait
Filter Table Results
Data set
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Dzur-Gejdosova1
(1)
Handel1
(1)
Lazear1
(1)
Odet1
(7)
Parker1
(3)
Payseur2
(1)
Shorter4
(6)
Shorter5
(6)
Shorter8
(6)
Taft1
(6)
Procedure / Protocol
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assisted reproduc...
(9)
histopathology
(16)
microscopy
(1)
sperm count
(12)
Treatment
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(none)
(38)
Panel
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CC
(7)
CC RIX
(6)
DO population
(6)
inbred
(10)
inbred w/CC8
(7)
QTL population
(2)
Sex
Clear All
f
(9)
m
(29)
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Data set
Procedure / Protocol
Treatment
Phenotype Measure / Variable (click to view)
Panel
No. of Strains
Sex
Age
Sample Size (Avg)
Year
Dzur-Gejdosova1:3
Dzur-Gejdosova1
microscopy
(none)
sperm cells counted in Bürker chamber [millions]
SC
27203
QTL population
m
9wks
N=254
2012
Handel1:49
Handel1
sperm count
(none)
sperm count (n x 10
6
per mouse) [n]
sperm_count
12049
inbred
14
m
8-10wks
N=5
2010
Lazear1:2
Lazear1
sperm count
(none)
number of sperm per mL of semen (x 10
6
) [n/mL]
sperm_count
63102
CC
10
m
15-22wks
N=2
2018
Odet1:31
Odet1
sperm count
(none)
sperm count per mouse (x 10
6
) [n]
sperm_per_mouse
53731
inbred w/CC8
8
m
10-66wks
N=21
2015
Odet1:32
Odet1
sperm count
(none)
sperm count per mg testis weight (x 10
3
) [n]
sperm_per_testis
53732
inbred w/CC8
8
m
10-66wks
N=20
2015
Odet1:33
Odet1
sperm count
(none)
sperm count per seminiferous epithelium length (x 10
3
) [n]
sperm_per_seminif
53733
inbred w/CC8
8
m
10-66wks
N=19
2015
Odet1:41
Odet1
histopathology
(none)
percentage of sperm with normal morphology [%]
sperm_normal
53741
inbred w/CC8
8
m
10-66wks
N=14
2015
Odet1:42
Odet1
histopathology
(none)
percentage of sperm with abnormal head shape [%]
sperm_abnormal_head
53742
inbred w/CC8
8
m
10-66wks
N=14
2015
Odet1:43
Odet1
histopathology
(none)
percentage of sperm with abnormal tail bending [%]
sperm_abnormal_tail
53743
inbred w/CC8
8
m
10-66wks
N=14
2015
Odet1:44
Odet1
histopathology
(none)
percentage of sperm with broken tails [%]
sperm_broken_tail
53744
inbred w/CC8
8
m
10-66wks
N=14
2015
Parker1:1
Parker1
assisted reproduction
(none)
mean number of oocytes per female following treatment [n]
oocyte_num
62901
2.5 IU eCG 5 IU eCG 5 + 5 IU eCG
inbred
6
f
3-6wks
N=18
2011
Parker1:4
Parker1
assisted reproduction
(none)
mean number of fertilized oocytes per female following treatment [n]
oocyte_fert_num
62904
2.5 IU eCG 5 IU eCG 5 + 5 IU eCG
inbred
6
f
3-6wks
N=18
2011
Parker1:7
Parker1
assisted reproduction
(none)
percentage of oocytes that are fertilized per female following treatment [%]
oocyte_fert_pct
62907
2.5 IU eCG 5 IU eCG 5 + 5 IU eCG
inbred
6
f
3-6wks
N=18
2011
Payseur2:3
Payseur2
sperm count
(none)
sperm count per mL (x10
6
) [n]
SpermDensity
64003
QTL population
m
10-11wks
N=312
2018
Shorter4:12
Shorter4
sperm count
(none)
sperm count per mouse (x 10
6
) [n]
sperm_count
110104
CC
12
m
15-33wks
N=3
2019
Shorter4:13
Shorter4
sperm count
(none)
sperm count per mg testis weight (x 10
3
) [n/mg]
sperm_adj
110105
CC
12
m
15-33wks
N=3
2019
Shorter4:22
Shorter4
histopathology
(none)
percentage of sperm with normal morphology [%]
normal_sperm
110114
CC
12
m
15-33wks
N=3
2019
Shorter4:23
Shorter4
histopathology
(none)
percentage of sperm with abnormal head shape [%]
abnormal_head
110115
CC
12
m
15-33wks
N=3
2019
Shorter4:24
Shorter4
histopathology
(none)
percentage of sperm with abnormal tail bending [%]
abnormal_tail
110116
CC
12
m
15-33wks
N=3
2019
Shorter4:25
Shorter4
histopathology
(none)
percentage of sperm with broken tails [%]
broken_tail
110117
CC
12
m
15-33wks
N=3
2019
Shorter5:12
Shorter5
sperm count
(none)
sperm count per mouse (x 10
6
) [n]
sperm_count
110129
CC RIX
28
m
7-44wks
N=4
2019
Shorter5:13
Shorter5
sperm count
(none)
sperm count per mg testis weight (x 10
3
) [n/mg]
sperm_adj
110130
CC RIX
28
m
7-44wks
N=4
2019
Shorter5:22
Shorter5
histopathology
(none)
percentage of sperm with normal morphology [%]
normal_sperm
110139
CC RIX
28
m
7-44wks
N=4
2019
Shorter5:23
Shorter5
histopathology
(none)
percentage of sperm with abnormal head shape [%]
abnormal_head
110140
CC RIX
28
m
7-44wks
N=4
2019
Shorter5:24
Shorter5
histopathology
(none)
percentage of sperm with abnormal tail bending [%]
abnormal_tail
110141
CC RIX
28
m
7-44wks
N=4
2019
Shorter5:25
Shorter5
histopathology
(none)
percentage of sperm with broken tails [%]
broken_tail
110142
CC RIX
28
m
7-44wks
N=4
2019
Shorter8:13
Shorter8
sperm count
(none)
sperm count per mouse (x10
6
) [n]
sperm_count
110168
DO population
m
12-15wks
N=150
2019
Shorter8:14
Shorter8
sperm count
(none)
sperm count per mg testis weight (x10
3
) [n]
sperm_adj
110169
DO population
m
12-15wks
N=149
2019
Shorter8:27
Shorter8
histopathology
(none)
percentage of sperm with normal morphology [%]
normal_sperm
110182
DO population
m
12-15wks
N=150
2019
Shorter8:28
Shorter8
histopathology
(none)
percentage of sperm with abnormal head shape [%]
abnormal_head
110183
DO population
m
12-15wks
N=150
2019
Shorter8:29
Shorter8
histopathology
(none)
percentage of sperm with abnormal tail bending [%]
abnormal_tail
110184
DO population
m
12-15wks
N=150
2019
Shorter8:30
Shorter8
histopathology
(none)
percentage of sperm with broken tails [%]
broken_tail
110185
DO population
m
12-15wks
N=150
2019
Taft1:1
Taft1
assisted reproduction
(none)
percentage of females responding to superovulation [%]
super_pct
19301
inbred
10
f
N=17
2006
Taft1:3
Taft1
assisted reproduction
(none)
total oocytes per donor [n]
oocyte_donor
19303
inbred
10
f
N=17
2006
Taft1:5
Taft1
assisted reproduction
(none)
percent of live oocytes per donor [%]
pct_live_super
19305
inbred
10
f
N=17
2006
Taft1:6
Taft1
assisted reproduction
(none)
percent of dead oocytes per donor [%]
pct_dead_super
19306
inbred
10
f
N=17
2006
Taft1:7
Taft1
assisted reproduction
(none)
percent of fragmented oocytes per donor [%]
pct_frag_super
19307
inbred
10
f
N=17
2006
Taft1:14
Taft1
assisted reproduction
(none)
fragmented oocytes, percentage of IVF dish cells [%]
pct_frag_IVF
19314
inbred
10
f
N=17
2006
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