MPD: Phenotype measures mapped to MP:0009250, abnormal appendicular skeleton morphology

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Phenotype measures associated with ontology term
MP:0009250 'abnormal appendicular skeleton morphology'

All measures in this list are mapped to the ontology descendants of MP:0009250. None are mapped to MP:0009250 directly.

MP:0000149 abnormal scapula morphology
MP:0000552 abnormal radius morphology
MP:0000558 abnormal tibia morphology
MP:0000559 abnormal femur morphology
MP:0004214 abnormal long bone diaphysis morphology
MP:0005108 abnormal ulna morphology

This MP term has been mapped to these MPD phenotype measurements to help users find relevant data. It should be noted that MPD measurements typically have a mixture of high-end, low-end and "normal" readings.

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Beamer1:1	Beamer1	computed tomography	(none)	femur, average bone volume (total, mid diaphysis) [g/cm³] femur_mid_cort_vol 10501	QTL population		f	20wks	N=711	1999

Beamer1:2	Beamer1	computed tomography	(none)	femur, average cortical bone volume (mid-diaphysis) [g/cm³] femur_mid_tot_vol 10502	QTL population		f	20wks	N=711	1999

Beamer2:6	Beamer2	computed tomography	(none)	femur, average bone volume (total, mid-diaphysis) [g/cm³] femur_mid_tot_vol 11206	QTL population		f	16wks	N=999	2001

Beamer2:7	Beamer2	computed tomography	(none)	femur, average cortical bone volume, mid-diaphysis [g/cm³] femur_mid_cort_vol 11207	QTL population		f	16wks	N=999	2001

Beamer2:8	Beamer2	computed tomography	(none)	femur, percentage of total volume that is cortical bone [%] femur_pct_cort 11208	QTL population		f	16wks	N=999	2001

Beamer2:9	Beamer2	computed tomography	(none)	femur, surface area to tissue volume (index) [ratio] femur_ratio 11209	QTL population		f	16wks	N=999	2001

Beamer2:10	Beamer2	computed tomography	(none)	femur, length, condyles to rostral tip of greater trochanter [mm] femur_length 11210	QTL population		f	16wks	N=999	2001

Beamer2:11	Beamer2	computed tomography	(none)	femur, average cortical thickness, mid-diaphysis [mm] femur_thickness 11211	QTL population		f	16wks	N=999	2001

Beamer2:12	Beamer2	computed tomography	(none)	femur, medial to lateral width, mid-diaphysis [mm] femur_ML 11212	QTL population		f	16wks	N=999	2001

Beamer2:13	Beamer2	computed tomography	(none)	femur, anterior to posterior width, rostral to caudal, mid-diaphysis [mm] femur_AP 11213	QTL population		f	16wks	N=999	2001

Beamer2:14	Beamer2	computed tomography	(none)	femur, ratio of medial-lateral (ML) to anterior-posterior (AP) [ratio] femur_ML_AP 11214	QTL population		f	16wks	N=999	2001

Burke1:1	Burke1	computed tomography	(none)	right femur length [mm] Femur_length 26301	QTL population		f	80wks	N=505	2012

Burke1:21	Burke1	computed tomography	(none)	right femur length [mm] Femur_length_b 26801	QTL population		f	80wks	N=832	2012

Chesler3:90	Chesler3	bone dimensions	(none)	periosteal (outer) circumference, femoral mid-diaphysis [mm] bone_circumference 43590	CC pre w/par	235	both	7-15wks	N=1	2011

Donahue2:13	Donahue2	bone dimensions	(none)	length of right femur, condyles to rostral tip of greater trochanter [mm] femur_length 17213	inbred	10	both	16wks	N=10	2004

Donahue2:14	Donahue2	bone dimensions	(none)	anterior to posterior, rostral to caudal, width of right femur, mid-diaphysis [mm] femur_width_AP 17214	inbred	10	both	16wks	N=10	2004

Donahue2:15	Donahue2	bone dimensions	(none)	medial to lateral width of right femur, mid-diaphysis [mm] femur_width_ML 17215	inbred	10	both	16wks	N=10	2004

Donahue2:16	Donahue2	computed tomography	(none)	cross sectional bone area, whole thigh area minus muscle area, femoral mid-diaphysis [mm²] femur_area 17216	inbred	10	both	16wks	N=10	2004

Donahue2:17	Donahue2	computed tomography	(none)	cortical thickness of right femur, pQCT [mm] femur_thickness_R1 17217	inbred	10	both	16wks	N=10	2004

Donahue2:18	Donahue2	computed tomography	(none)	cortical thickness of right femur, µCT [mm] femur_thickness_R2 17218	inbred	10	both	16wks	N=10	2004

Donahue2:19	Donahue2	computed tomography	(none)	cortical thickness of left femur, pQCT [mm] femur_thickness_L 17219	inbred	10	both	16wks	N=10	2004

Donahue2:20	Donahue2	computed tomography	(none)	periosteal (outer) circumference, femoral mid-diaphysis [mm] femur_out 17220	inbred	10	both	16wks	N=10	2004

Donahue2:21	Donahue2	computed tomography	(none)	endosteal (inner) circumference, femoral mid-diaphysis [mm] femur_in 17221	inbred	10	both	16wks	N=10	2004

Donahue2:22	Donahue2	DXA	(none)	cross-sectional area of thigh muscle and bone, femoral mid-diaphysis [mm²] thigh_area 17222	inbred	10	both	16wks	N=10	2004

GMC21:2	GMC21	bone dimensions	(none)	tibia length [mm] tibia_length 57002	inbred w/CC8	8	both	21wks	N=11	2018

JaxKOMP-EAP:336	JaxKOMP-EAP	X-ray	(none)	radius radius 100668 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:337	JaxKOMP-EAP	X-ray	(none)	scapulae scapulae 100670 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:345	JaxKOMP-EAP	X-ray	(none)	tibia tibia 100680 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:347	JaxKOMP-EAP	X-ray	(none)	ulna ulna 100683 categorical	KOMP	76	both	14wks		2017

Levy1:3	Levy1	computed tomography	(none)	femur length [mm] femur_length 54903	CC pre	31	both	8-14wks	N=3	2015

Lionikas1:10	Lionikas1	bone dimensions	exercise	length of femur [mm] femur 48510 control exercise	inbred	6	m	11-14wks	N=15	2012

Wergedal1:3	Wergedal1	DXA	(none)	cortical thickness [mm] CrtThk 18903	QTL population		f	10wks	N=661	2006

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