MPD: Phenotype measures mapped to MA:0001752, reproductive organ

Phenotype measures directly associated with ontology term
MA:0001752 'reproductive organ'

This list only includes measures mapped to MA:0001752 directly. Measures mapped to its ontology descendants are not included. Alternatively, you can show measures mapped to MA:0001752 AND its descendants.

MA:0000411 testis
MA:0000412 seminiferous tubule
MA:0002420 gonad

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Ankra-Badu1:12	Ankra-Badu1	organ weights	(none)	right testis weight [mg] TESTIS 21212	QTL population		both	10wks	N=502	2009

Bouma1:1	Bouma1	microscopy	(none)	fetal gonads [designation] gonads 15901	QTL population		m		N=148	2005

Bouma1:2	Bouma1	microscopy	(none)	scoring of fetal gonadal status [score] score 15902	QTL population		m	embryo	N=148	2005

Dzur-Gejdosova1:2	Dzur-Gejdosova1	organ weights	(none)	testes weight [mg] TW 27202	QTL population		m	9wks	N=254	2012

Dzur-Gejdosova1:3	Dzur-Gejdosova1	microscopy	(none)	sperm cells counted in Bürker chamber [millions] SC 27203	QTL population		m	9wks	N=254	2012

Handel1:41	Handel1	organ weights	(none)	seminal vesicle weight, left and right combined [g] seminal_vesicle 12041	inbred	14	m	8-10wks	N=5	2010

Handel1:45	Handel1	organ weights	(none)	testicular weight, left and right combined [g] testes 12045	inbred	14	m	8-10wks	N=5	2010

JaxKOMP-EAP:116	JaxKOMP-EAP	observation (SHIRPA)	(none)	genitalia presence genitalia_presence 100410 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:117	JaxKOMP-EAP	observation (SHIRPA)	(none)	genitalia size genitalia_size 100411 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:118	JaxKOMP-EAP	observation (SHIRPA)	(none)	genitalia morphology genitalia_morphology 100412 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-LAP:105	JaxKOMP-LAP	observation (SHIRPA)	(none)	genitalia presence genitalia_presence 101410 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:106	JaxKOMP-LAP	observation (SHIRPA)	(none)	genitalia size genitalia_size 101411 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:107	JaxKOMP-LAP	observation (SHIRPA)	(none)	genitalia morphology genitalia_morphology 101412 categorical	KOMP	148	both	66-72wks		2021

Lazear1:1	Lazear1	organ weights	(none)	testis weight (1 testis) [g] testis_wt 63101	CC	12	m	15-22wks	N=2	2018

Odet1:13	Odet1	organ weights	(none)	mean testis weight [g] testis_wt 53713	inbred w/CC8	8	m	10-66wks	N=27	2015

Odet1:21	Odet1	histopathology	(none)	mean seminiferous tubule radius, transverse section [µm] seminif_radius 53721	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:22	Odet1	histopathology	(none)	seminiferious epithelium length, transverse section [cm] seminif_length 53722	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:23	Odet1	histopathology	(none)	number of seminiferous tubules, transverse section [n] seminif_count 53723	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:24	Odet1	histopathology	(none)	number of seminiferous tubules with vacuoles, transverse section [n] seminif_vacuoles 53724	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:25	Odet1	histopathology	(none)	number of seminiferous tubules with many vacuoles, transverse section [n] seminif_many_vacuoles 53725	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:26	Odet1	histopathology	(none)	number of seminiferous tubules with germ cell loss, transverse section [n] seminif_germ_loss 53726	inbred w/CC8	8	m	10-66wks	N=18	2015

Odet1:27	Odet1	histopathology	(none)	number of seminiferous tubules with abnormal germ cells, transverse section [n] seminif_germ_abnormal 53727	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:28	Odet1	histopathology	(none)	number of seminiferous tubules with germ cell sloughing, transverse section [n] seminif_germ_slough 53728	inbred w/CC8	8	m	10-66wks	N=26	2015

Payseur2:1	Payseur2	organ weights	(none)	right testis weight adjusted for body weight [mg/g] RelRTestiswt 64001	QTL population		m	10-11wks	N=312	2018

Payseur2:2	Payseur2	organ weights	(none)	right testis weight [mg] RTestisWt 64002	QTL population		m	10-11wks	N=312	2018

Payseur2:4	Payseur2	organ dimensions	(none)	testis width [mm] TestisWidth 64004	QTL population		m	10-11wks	N=312	2018

Payseur2:5	Payseur2	organ dimensions	(none)	testis height [mm] TestisHeight 64005	QTL population		m	10-11wks	N=312	2018

Payseur2:6	Payseur2	histopathology	(none)	mulinucleated syncytia [n] MNSyncytiaPerTestis 64006	QTL population		m	10-11wks	N=312	2018

Payseur2:7	Payseur2	histopathology	(none)	tubules with apoptosis [n] TubuleswApop 64007	QTL population		m	10-11wks	N=312	2018

Payseur2:8	Payseur2	histopathology	(none)	spermatogonia with apoptosis [n] ApopGonia 64008	QTL population		m	10-11wks	N=312	2018

Payseur2:9	Payseur2	histopathology	(none)	meiotic cells with apoptosis [n] ApopMeiotic 64009	QTL population		m	10-11wks	N=312	2018

Payseur2:10	Payseur2	histopathology	(none)	round spermatids with apoptosis [n] ApopRS 64010	QTL population		m	10-11wks	N=312	2018

Payseur2:11	Payseur2	histopathology	(none)	Stage VII Sertoli cells [n] VIIsertolis 64011	QTL population		m	10-11wks	N=312	2018

Payseur2:12	Payseur2	histopathology	(none)	Stage VII pachytene cells [n] VIIpachys 64012	QTL population		m	10-11wks	N=312	2018

Payseur2:13	Payseur2	histopathology	(none)	Stage VII round spermatids [n] VIIRSs 64013	QTL population		m	10-11wks	N=312	2018

Payseur2:14	Payseur2	histopathology	(none)	Stage VII pachytene cells per Sertoli cell [n] PachyperSertoli 64014	QTL population		m	10-11wks	N=312	2018

Payseur2:15	Payseur2	histopathology	(none)	Stage VII round spermatids per Sertoli cell [n] RSperSertoli 64015	QTL population		m	10-11wks	N=312	2018

Payseur2:16	Payseur2	histopathology	(none)	Stage VII round spermatids per pachytene cell [n] RSperPachy 64016	QTL population		m	10-11wks	N=312	2018

Payseur2:17	Payseur2	histopathology	(none)	Stage VII mean tubule area [µm²] VIITubuleArea 64017	QTL population		m	10-11wks	N=312	2018

Shorter4:2	Shorter4	organ weights	(none)	testis weight [g] testis 110094 left right	CC	12	m	15-33wks	N=3	2019

Shorter4:4	Shorter4	organ weights	(none)	testis weight mean [g] testis_mean 110096	CC	12	m	15-33wks	N=3	2019

Shorter4:5	Shorter4	organ weights	(none)	testis weight as a percentage of body weight [%] testis_pct_bw 110097	CC	12	m	15-33wks	N=3	2019

Shorter5:2	Shorter5	organ weights	(none)	testis weight [g] testis 110143 left right	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:4	Shorter5	organ weights	(none)	testis weight mean [g] testis_mean 110121	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:5	Shorter5	organ weights	(none)	testis weight as percentage of body weight [%] testis_pct_bw 110122	CC RIX	28	m	7-44wks	N=4	2019

Shorter8:3	Shorter8	organ weights	(none)	testis weight [g] testis 110158 left right	DO population		m	12-15wks	N=150	2019

Shorter8:5	Shorter8	organ weights	(none)	testis weight mean [g] testis_mean 110160	DO population		m	12-15wks	N=150	2019

Shorter8:6	Shorter8	organ weights	(none)	testis weight as percentage of body weight [%] testis_pct_bw 110161	DO population		m	12-15wks	N=150	2019

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