MPD: Phenotype measures mapped to MA:0000323, alimentary system

Phenotype measures associated with ontology term
MA:0000323 'alimentary system'

This list includes measures mapped MA:0000323 AND its ontology descendants. Alternatively, you can show measures mapped to MA:0000323 only.

MA:0000328 intestine
MA:0000334 cecum
MA:0000335 colon
MA:0000345 oral region cartilage/bone
MA:0000348 tooth
MA:0000349 incisor
MA:0001487 mandible
MA:0001491 maxilla
MA:0001492 maxilla alveolar process
MA:0001591 taste bud

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Auwerx2:123	Auwerx2	organ weights	(none)	cecum weight [g] cecum_wt 114651 CD HFD	inbred w/CC8	9	both	21wks	N=4	2021

Auwerx2:141	Auwerx2	organ dimensions	(none)	intestine length [cm] intestine_length 114669 CD HFD	inbred w/CC8	9	both	21wks	N=4	2021

Bachmanov1:3	Bachmanov1	bottle choice test	(none)	sodium chloride (NaCl) solution taste threshold [mM] NaCl_threshold 40403	inbred	13	m	7-8wks	N=10	2011

Bodnar1:5	Bodnar1	intake monitoring	sucrose	daily sucrose intake with sucrose in drinking water [mL] sucrose 22605 baseline 0.01% 2.5% 20%	inbred	12	m	13-17wks	N=10	2006

Bodnar1:20	Bodnar1	intake monitoring	sucrose	daily water intake with sucrose in drinking water [mL] water 22620 baseline 0.01% 2.5% 20%	inbred	12	m	13-17wks	N=10	2006

Bodnar1:24	Bodnar1	intake monitoring	sucrose	daily fluid intake, sucrose in drinking water [mL] fluid 22624 baseline 0.01% 2.5% 20%	inbred	12	m	13-17wks	N=10	2006

Bodnar1:32	Bodnar1	intake monitoring	sucrose	percent sucrose intake with sucrose in drinking water [%] pct_sucrose 22632 baseline 0.01% 2.5% 20%	inbred	12	m	13-17wks	N=10	2006

Broman1:1	Broman1	organ dimensions	(none)	gut length of mouse [cm] gutlength 18301	QTL population		both		N=534	2006

CSNA01:1	CSNA01	operant conditioning chamber	sucrose	fixed ratio 1 (FR1), active lever presses, 8 h test [n] FR1active 60201 day 1 day 2 day 3 across 3 days	HMDP	91	m	7-22wks	N=4	2018

CSNA01:5	CSNA01	operant conditioning chamber	sucrose	fixed ratio 1 (FR1), lever press rate, 8 h test [n/s] FR1rate 60206 day 1 day 2 day 3 across 3 days	HMDP	91	m	7-22wks	N=4	2018

CSNA01:9	CSNA01	operant conditioning chamber	sucrose	variable ratio 2 (VR2), active lever presses, 8 h test [n] VR2active 60211 day 1 day 2 day 3 across 3 days	HMDP	91	m	7-22wks	N=4	2018

CSNA01:13	CSNA01	operant conditioning chamber	sucrose	variable ratio 2 (VR2), lever press rate, 8 h test [n] VR2rate 60216 day 1 day 2 day 3 across 3 days	HMDP	91	m	7-22wks	N=4	2018

CSNA01:17	CSNA01	operant conditioning chamber	sucrose	variable ratio 5 (VR5), active lever presses, 8 h test [n] VR5active 60221 day 1 day 2 day 3 across 3 days	HMDP	91	m	7-22wks	N=4	2018

CSNA01:21	CSNA01	operant conditioning chamber	sucrose	variable ratio 5 (VR5), lever press rate, 8 h test [n/s] VR5rate 60226 day 1 day 2 day 3 across 3 days	HMDP	91	m	7-22wks	N=4	2018

CSNA01:25	CSNA01	operant conditioning chamber	sucrose	active lever presses, 8 h test [n] Actives 60231 day 1 day 2 day 3 across 3 days	HMDP	91	m	7-22wks	N=4	2018

CSNA01:29	CSNA01	operant conditioning chamber	sucrose	reinforcers earned, 8 h test [n] Reinfs 60241 day 1 day 2 day 3 across 3 days	HMDP	91	m	7-22wks	N=4	2018

CSNA01:33	CSNA01	operant conditioning chamber	sucrose	time elapsed before first reinforcer earned, 8 h test [s] FirstReinf 60251	HMDP	91	m	7-22wks	N=4	2018

CSNA01:34	CSNA01	operant conditioning chamber	sucrose	time elapsed between earning first and fiftieth reinforcer, 8 h test [s] Time1to50 60252	HMDP	82	m	7-22wks	N=3	2018

CSNA01:35	CSNA01	operant conditioning chamber	sucrose	whether criterion of 50 reinforcers earned was met, 8 h test (1=yes, 0=no) [score] Learned 60253	HMDP	91	m	7-22wks	N=4	2018

Farmer1:1	Farmer1	histopathology	(none)	severity of lesions in cecum [score] CecumSeverity 11301	QTL population		both	6wks	N=206	2001

Farmer1:2	Farmer1	histopathology	(none)	hyperplasia of cecum [score] CecumHyperplasia 11302	QTL population		both	6wks	N=206	2001

Farmer1:3	Farmer1	histopathology	(none)	ulceration in cecum [score] CecumUlceration 11303	QTL population		both	6wks	N=206	2001

Farmer1:4	Farmer1	histopathology	(none)	percentage of cecum damaged area [%] CecumDA 11304	QTL population		both	6wks	N=206	2001

Farmer1:5	Farmer1	histopathology	(none)	sum of cecum severity, hyperplasia, ulceration and damaged area scores [score] CecumTotalScore 11305	QTL population		both	6wks	N=206	2001

Farmer1:6	Farmer1	histopathology	(none)	percentage of proximal colon damaged area [%] ProxDA 11306	QTL population		both	6wks	N=206	2001

Farmer1:7	Farmer1	histopathology	(none)	severity of lesions in proximal colon [score] ProxSeverity 11307	QTL population		both	6wks	N=206	2001

Farmer1:8	Farmer1	histopathology	(none)	hyperplasia of proximal colon [score] ProxHyperplasia 11308	QTL population		both	6wks	N=206	2001

Farmer1:9	Farmer1	histopathology	(none)	ulceration in proximal colon [score] ProxUlceration 11309	QTL population		both	6wks	N=206	2001

Farmer1:10	Farmer1	histopathology	(none)	percentage of damaged area in mid colon [%] MidDA 11310	QTL population		both	6wks	N=206	2001

Farmer1:11	Farmer1	histopathology	(none)	severity of lesions in mid colon [score] MidSeverity 11311	QTL population		both	6wks	N=206	2001

Farmer1:12	Farmer1	histopathology	(none)	hyperplasia of mid colon [score] MidHyperplasia 11312	QTL population		both	6wks	N=206	2001

Farmer1:13	Farmer1	histopathology	(none)	ulcers and crypts frequency score [score] MidUlceration 11313	QTL population		both	6wks	N=206	2001

Farmer1:14	Farmer1	histopathology	(none)	percentage of damaged area in distal colon [%] DistalDA 11314	QTL population		both	6wks	N=206	2001

Farmer1:15	Farmer1	histopathology	(none)	severity of lesions in distal colon [score] DistalSeverity 11315	QTL population		both	6wks	N=206	2001

Farmer1:16	Farmer1	histopathology	(none)	hyperplasia of distal colon [score] DistalHyperplasia 11316	QTL population		both	6wks	N=206	2001

Farmer1:17	Farmer1	histopathology	(none)	ulceration in distal colon [score] DistalUlceration 11317	QTL population		both	6wks	N=206	2001

Farmer1:18	Farmer1	histopathology	(none)	proximal colon score [score] ProximalColon 11318	QTL population		both	6wks	N=206	2001

Farmer1:19	Farmer1	histopathology	(none)	middle colon score [score] MiddleColon 11319	QTL population		both	6wks	N=206	2001

Farmer1:20	Farmer1	histopathology	(none)	distal colon score [score] DistalColon 11320	QTL population		both	6wks	N=206	2001

Farmer1:21	Farmer1	histopathology	(none)	total score [score] ColonTotalScore 11321	QTL population		both	6wks	N=206	2001

Graubert1:20	Graubert1	histopathology	ENU	gastrointestinal (GI) tumor frequency rate [score] GI_tumor 11620 control ENU	inbred	20	both	13-68wks	N=6	2006

Hallgrimsson1:6	Hallgrimsson1	bone dimensions	(none)	midline superior incisor, right side, x coordinate [mm] lm1_x 110552	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:7	Hallgrimsson1	bone dimensions	(none)	midline superior incisor, right side, y coordinate [mm] lm1_y 110553	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:8	Hallgrimsson1	bone dimensions	(none)	midline superior incisor, right side, z coordinate [mm] lm1_z 110554	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:9	Hallgrimsson1	bone dimensions	(none)	anterior most intersection of nasal and premaxilla, right side, x coordinate [mm] lm2_x 110555	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:10	Hallgrimsson1	bone dimensions	(none)	anterior most intersection of nasal and premaxilla, right side, y coordinate [mm] lm2_y 110556	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:11	Hallgrimsson1	bone dimensions	(none)	anterior most intersection of nasal and premaxilla, right side, z coordinate [mm] lm2_z 110557	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:12	Hallgrimsson1	bone dimensions	(none)	anterior margin of incisive foramen, right side, x coordinate [mm] lm3_x 110558	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:13	Hallgrimsson1	bone dimensions	(none)	anterior margin of incisive foramen, right side, y coordinate [mm] lm3_y 110559	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:14	Hallgrimsson1	bone dimensions	(none)	anterior margin of incisive foramen, right side, z coordinate [mm] lm3_z 110560	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:15	Hallgrimsson1	bone dimensions	(none)	medial maxilla-premaxilla junction, right side, x coordinate [mm] lm4_x 110561	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:16	Hallgrimsson1	bone dimensions	(none)	medial maxilla-premaxilla junction, right side, y coordinate [mm] lm4_y 110562	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:17	Hallgrimsson1	bone dimensions	(none)	medial maxilla-premaxilla junction, right side, z coordinate [mm] lm4_z 110563	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:18	Hallgrimsson1	bone dimensions	(none)	posterior incisive foramen, right side, x coordinate [mm] lm5_x 110564	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:19	Hallgrimsson1	bone dimensions	(none)	posterior incisive foramen, right side, y coordinate [mm] lm5_y 110565	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:20	Hallgrimsson1	bone dimensions	(none)	posterior incisive foramen, right side, z coordinate [mm] lm5_z 110566	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:21	Hallgrimsson1	bone dimensions	(none)	anterior superior alveoli, right side, x coordinate [mm] lm6_x 110567	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:22	Hallgrimsson1	bone dimensions	(none)	anterior superior alveoli, right side, y coordinate [mm] lm6_y 110568	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:23	Hallgrimsson1	bone dimensions	(none)	anterior superior alveoli, right side, z coordinate [mm] lm6_z 110569	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:42	Hallgrimsson1	bone dimensions	(none)	midline superior incisor, left side, x coordinate [mm] lm13_x 110588	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:43	Hallgrimsson1	bone dimensions	(none)	midline superior incisor, left side, y coordinate [mm] lm13_y 110589	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:44	Hallgrimsson1	bone dimensions	(none)	midline superior incisor, left side, z coordinate [mm] lm13_z 110590	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:45	Hallgrimsson1	bone dimensions	(none)	anterior most intersection of nasal and premaxilla, left side, x coordinate [mm] lm14_x 110591	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:46	Hallgrimsson1	bone dimensions	(none)	anterior most intersection of nasal and premaxilla, left side, y coordinate [mm] lm14_y 110592	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:47	Hallgrimsson1	bone dimensions	(none)	anterior most intersection of nasal and premaxilla, left side, z coordinate [mm] lm14_z 110593	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:48	Hallgrimsson1	bone dimensions	(none)	anterior margin of incisive foramen, left side, x coordinate [mm] lm15_x 110594	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:49	Hallgrimsson1	bone dimensions	(none)	anterior margin of incisive foramen, left side, y coordinate [mm] lm15_y 110595	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:50	Hallgrimsson1	bone dimensions	(none)	anterior margin of incisive foramen, left side, z coordinate [mm] lm15_z 110596	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:51	Hallgrimsson1	bone dimensions	(none)	medial maxilla-premaxilla junction, left side, x coordinate [mm] lm16_x 110597	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:52	Hallgrimsson1	bone dimensions	(none)	medial maxilla-premaxilla junction, left side, y coordinate [mm] lm16_y 110598	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:53	Hallgrimsson1	bone dimensions	(none)	medial maxilla-premaxilla junction, left side, z coordinate [mm] lm16_z 110599	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:54	Hallgrimsson1	bone dimensions	(none)	posterior incisive foramen, left side, x coordinate [mm] lm17_x 110600	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:55	Hallgrimsson1	bone dimensions	(none)	posterior incisive foramen, left side, y coordinate [mm] lm17_y 110601	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:56	Hallgrimsson1	bone dimensions	(none)	posterior incisive foramen, left side, z coordinate [mm] lm17_z 110602	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:57	Hallgrimsson1	bone dimensions	(none)	anterior superior alveoli, left side, x coordinate [mm] lm18_x 110603	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:58	Hallgrimsson1	bone dimensions	(none)	anterior superior alveoli, left side, y coordinate [mm] lm18_y 110604	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:59	Hallgrimsson1	bone dimensions	(none)	anterior superior alveoli, left side, z coordinate [mm] lm18_z 110605	DO population		both	8-60wks	N=574	2020

Iraqi1:1	Iraqi1	computed tomography	P.gingivalis and F.nucleatum	bone volume of the maxillary jaw (x 10^-3), uninfected [mm³] control_bone_vol 49501	CC pre	23	both	8wks	N=4	2013

Iraqi1:2	Iraqi1	computed tomography	P.gingivalis and F.nucleatum	residual bone volume of the maxillary jaw (x 10^-3), post-infection (peridontitis) [mm³] residual_bone_vol 49502	CC pre	23	both	8wks	N=3	2013

JaxKOMP-EAP:113	JaxKOMP-EAP	observation (SHIRPA)	(none)	teeth presence teeth_presence 100407 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:114	JaxKOMP-EAP	observation (SHIRPA)	(none)	upper teeth appearance upper_teeth_appearance 100408 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:115	JaxKOMP-EAP	observation (SHIRPA)	(none)	lower teeth appearance lower_teeth_appearance 100409 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:323	JaxKOMP-EAP	X-ray	(none)	mandibles mandibles 100655 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:324	JaxKOMP-EAP	X-ray	(none)	maxilla maxilla 100656 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:344	JaxKOMP-EAP	X-ray	(none)	teeth teeth 100678 categorical	KOMP	76	both	14wks		2017

JaxKOMP-LAP:102	JaxKOMP-LAP	observation (SHIRPA)	(none)	teeth presence teeth_presence 101407 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:103	JaxKOMP-LAP	observation (SHIRPA)	(none)	upper teeth appearance upper_teeth_appearance 101408 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:104	JaxKOMP-LAP	observation (SHIRPA)	(none)	lower teeth appearance lower_teeth_appearance 101409 categorical	KOMP	148	both	66-72wks		2021

Mahler1:2	Mahler1	histopathology	(none)	cecum assessment, first Principal Component CecumPC1 12102	QTL population		both	6wks	N=102	2002

Mahler1:3	Mahler1	histopathology	(none)	proximal colon assessment, first Principal Component ProxPC1 12103	QTL population		both	6wks	N=102	2002

Mahler1:4	Mahler1	histopathology	(none)	middle colon assessment, first Principal Component MidPC1 12104	QTL population		both	6wks	N=102	2002

Mahler1:5	Mahler1	histopathology	(none)	distal colon assessment, first Principal Component DistPC1 12105	QTL population		both	6wks	N=102	2002

Mahler1:6	Mahler1	histopathology	(none)	ulceration (score 0-4, increasing severity), first Principal Component Ulceration-PC1 12106	QTL population		both	6wks	N=102	2002

Mahler1:7	Mahler1	histopathology	(none)	ulceration (score 0-4, increasing severity), second Principal Component Ulceration-PC2 12107	QTL population		both	6wks	N=102	2002

Schoonjans1:234	Schoonjans1	organ weights	high-fat diet	cecum weight [g] cecum_wt 112869 CD HFD	BXD w/par	36	m	29wks	N=5	2021

Schoonjans1:236	Schoonjans1	organ dimensions	high-fat diet	small intestine length [cm] small_intestine_length 112871 CD HFD	BXD w/par	36	m	29wks	N=5	2021

Tordoff1:3	Tordoff1	bottle choice test	(none)	preference for NaCl (sodium chloride) solutions [%] NaCl_pref 6103 concentration (mM): 75 150 300 450	inbred	28	m	4-12wks	N=11	2001

Tordoff1:9	Tordoff1	bottle choice test	(none)	preference for KCl (potassium chloride) solutions [%] KCl_pref 6109 concentration (mM): 10 30 100 200 300	inbred	28	m	4-12wks	N=12	2001

Tordoff1:16	Tordoff1	bottle choice test	(none)	preference for CaCl2 (calcium chloride) solutions [%] CaCl2_pref 6116 concentration (mM): 3 10 30 100	inbred	28	m	4-12wks	N=11	2001

Tordoff1:22	Tordoff1	bottle choice test	(none)	preference for NH4Cl (ammonium chloride) solutions [%] NH4Cl_pref 6122 concentration (mM): 10 30 100 300	inbred	28	m	4-12wks	N=11	2001

Tordoff3:8	Tordoff3	bottle choice test	(none)	preference for CaCl2 (calcium chloride) solutions [%] CaCl2_pref 10308 concentration (mM): 7.5 25 75	inbred w/CC7	40	both	9-11wks	N=10	2002

Tordoff3:11	Tordoff3	bottle choice test	(none)	preference for CaLa (calcium lactate) solutions [%] CaLa_pref 10311 concentration (mM): 7.5 25 75	inbred w/CC7	40	both	10-12wks	N=10	2002

Tordoff3:14	Tordoff3	bottle choice test	(none)	preference for NaCl (sodium chloride) solutions [%] NaCl_pref 10314 concentration (mM): 25 75 225	inbred w/CC7	40	both	11-13wks	N=10	2002

Tordoff3:17	Tordoff3	bottle choice test	(none)	preference for NaLa (sodium lactate) solutions [%] NaLa_pref 10317 concentration (mM): 25 75 225	inbred w/CC7	40	both	12-14wks	N=10	2002

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