MPD: Phenotype measures mapped to VT:0001502, behavioral circadian rhythm trait

Phenotype measures in Loos2 associated with ontology term
VT:0001502 'behavioral circadian rhythm trait'

Navigate ontologies

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Loos2:1	Loos2	home cage monitoring	(none)	cumulative number of activity bouts, over 3 days of testing, log10 transformed [log(n)] activity_num 54001 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:3	Loos2	home cage monitoring	(none)	cumulative duration of activity during dark phase, over 3 days of testing [s] activity_dur_DK 54003	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:4	Loos2	home cage monitoring	(none)	cumulative duration of activity during light phase, over 3 days of testing, log10 transformed [log(s)] activity_dur_LT 54004	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:5	Loos2	home cage monitoring	(none)	mean duration per activity bout, over 3 days of testing, log10 transformed [log(s)] activity_mean_dur 54005 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:7	Loos2	home cage monitoring	(none)	habituation ratio describing change in cumulative activity duration, over 3 days of testing, log10 transformed [log(ratio)] activity_dur_hab 54007 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:11	Loos2	home cage monitoring	(none)	dark-light index describing difference in cumulative activity duration between light and dark phase, over 3 days of testing [ratio] activity_dur_DKLT_index 54011	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:12	Loos2	home cage monitoring	(none)	cumulative duration in spout zone, over 3 days of testing, log10 transformed [log(s)] spout_dur 54012	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:14	Loos2	home cage monitoring	(none)	cumulative duration in feeding zone during dark phase, over 3 days of testing, log10 transformed [log(s)] feeding_dur_DK 54014	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:15	Loos2	home cage monitoring	(none)	feeding zone, duration [s] feeding_dur_LT 54015	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:16	Loos2	home cage monitoring	(none)	cumulative number of visits to OnShelter zone, over 3 days of testing, log10 transformed [log(n)] onshelter_num 54016 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:18	Loos2	home cage monitoring	(none)	cumulative duration in OnShelter zone, over 3 days of testing, log10 transformed [log(s)] onshelter_dur 54018 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:22	Loos2	home cage monitoring	(none)	change in activity proportion: anticipation of phase change, over 3 days of testing activity_anticipation 54022 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:24	Loos2	home cage monitoring	(none)	change in activity proportion: response to phase onset, over 3 days of testing activity_response 54024 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:26	Loos2	home cage monitoring	(none)	change in Spout zone duration: anticipation of phase change, over 3 days of testing spout_anticipation 54026 dark light	inbred w/CC7	11	m	8-12wks	N=35	2016

Loos2:28	Loos2	home cage monitoring	(none)	change in Spout zone duration: response to phase onset, over 3 days of testing spout_response 54028 dark light	inbred w/CC7	11	m	8-12wks	N=36	2016

Loos2:32	Loos2	home cage monitoring	(none)	change in Feeding zone duration: anticipation of phase change, over 3 days of testing feeding_anticipation 54032 dark light	inbred w/CC7	11	m	8-12wks	N=35	2016

Loos2:34	Loos2	home cage monitoring	(none)	change in Feeding zone duration: response to phase onset, over 3 days of testing feeding_response 54034 dark light	inbred w/CC7	11	m	8-12wks	N=36	2016

Loos2:36	Loos2	home cage monitoring	(none)	change in OnShelter zone duration: anticipation of phase change, over 3 days of testing onshelter_anticipation 54036 dark light	inbred w/CC7	11	m	8-12wks	N=35	2016

Loos2:38	Loos2	home cage monitoring	(none)	change in OnShelter zone duration: response to phase onset, over 3 days of testing onshelter_response 54038 dark light	inbred w/CC7	11	m	8-12wks	N=36	2016

Loos2:42	Loos2	home cage monitoring	(none)	cumulative long movement number, over 3 days of testing, log10 transformed [log(n)] long_move_num 54042 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:44	Loos2	home cage monitoring	(none)	cumulative long movement distance, over 3 days of testing, log10 transformed [log(cm)] long_move_dist 54044 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:46	Loos2	home cage monitoring	(none)	average velocity of 95th percentile fastest long movement segments, over 3 days of testing, log10 transformed [log(cm/s)] long_move_max_vel 54046	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:47	Loos2	home cage monitoring	(none)	cut-off value to separate short and long movements, over 3 days of testing, log10 transformed [log(cm)] long_move_threshold 54047	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:48	Loos2	home cage monitoring	(none)	cumulative short movement number, over 3 days of testing, log10 transformed [log(n)] short_move_num 54048 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:52	Loos2	home cage monitoring	(none)	cumulative short movement distance, over 3 days of testing, log10 transformed [log(cm)] short_move_dist 54052 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:54	Loos2	home cage monitoring	(none)	cumulative number of long arrests, over 3 days of testing, log10 transformed [log(n)] long_arrest_num 54054 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:56	Loos2	home cage monitoring	(none)	cumulative duration of long arrests during dark phase, over 3 days of testing, log10 transformed [log(s)] long_arrest_dur_DK 54056	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:57	Loos2	home cage monitoring	(none)	long arrest, duration [s] long_arrest_dur_LT 54057	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:58	Loos2	home cage monitoring	(none)	mean duration per long arrest, over 3 days of testing, log10 transformed [log(s)] long_arrest_dur_mean 54058 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:62	Loos2	home cage monitoring	(none)	cut-off value to separate short and long arrests, over 3 days of testing, log10 transformed [log(s)] long_arrest_threshold 54062	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:63	Loos2	home cage monitoring	(none)	cumulative number of short arrests, over 3 days of testing, log10 transformed [log(n)] short_arrest_num 54063 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:65	Loos2	home cage monitoring	(none)	cumulative duration of short arrests during dark phase, over 3 days of testing [s] short_arrest_dur_DK 54065	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:66	Loos2	home cage monitoring	(none)	short arrest, duration [log(s)] short_arrest_dur_LT 54066	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:67	Loos2	home cage monitoring	(none)	mean duration per short arrest, over 3 days of testing, log10 transformed [log(s)] short_arrest_dur_mean 54067 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:71	Loos2	home cage monitoring	(none)	cumulative number of long shelter visits (sheltering), over 3 days of testing, log10 transformed [log(n)] long_shelter_num 54071 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:73	Loos2	home cage monitoring	(none)	cumulative duration of long shelter visits (sheltering), over 3 days of testing [s] long_shelter_dur 54073 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:75	Loos2	home cage monitoring	(none)	fraction of shelter visits (sheltering) with duration longer than long shelter visit threshold, over 3 days of testing, log10 transformed [log(ratio)] long_shelter_fraction 54075	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:76	Loos2	home cage monitoring	(none)	cut-off value to separate intermediate and long shelter visits (sheltering), over 3 days of testing [s] long_shelter_threshold 54076	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:77	Loos2	home cage monitoring	(none)	cumulative number of short shelter visits (sheltering), over 3 days of testing, log10 transformed [log(n)] short_shelter_num 54077 dark light	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:81	Loos2	home cage monitoring	(none)	cumulative duration of short shelter visits (sheltering) during dark phase, over 3 days of testing [s] short_shelter_dur_DK 54081	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:82	Loos2	home cage monitoring	(none)	short shelter visit, duration [log(s)] short_shelter_dur_LT 54082	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:83	Loos2	home cage monitoring	(none)	cut-off value to separate short and intermediate shelter visits (sheltering), over 3 days of testing [log(s)] short_shelter_threshold 54083	inbred w/CC7	11	m	8-12wks	N=40	2016

Loos2:90	Loos2	home cage monitoring	(none)	mean within-strain variation in 22 principal components representing 115 spontaneous behavioral parameters within_strain_var 54401	inbred w/CC7	8	m	8-12wks		2016

Filter Table Results