Phenotype measure:   Loos2   long_move_threshold

ID, description, units MPD:54047   long_move_threshold   cut-off value to separate short and long movements, over 3 days of testing, log10 transformed   [log(cm)]
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
Ontology mappings

  STRAIN COMPARISON PLOT
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Loos2 - cut-off value to separate short and long movements, over 3 days of testing, log10 transformed



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means0.396   log(cm)
Median of the strain means0.387   log(cm)
SD of the strain means± 0.0582
Coefficient of variation (CV)0.147
Min–max range of strain means0.299   –   0.502   log(cm)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 1.4136 0.1414 42.6961 < 0.0001
Residuals 426 1.4105 0.0033


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.356 0.0639   59 0.00831 0.18 0.237, 0.488 -0.69
A/J m 0.378 0.0507   43 0.00773 0.134 0.271, 0.542 -0.31
BALB/cByJ m 0.424 0.0482   44 0.00726 0.114 0.319, 0.522 0.48
C3H/HeJ m 0.299 0.0606   29 0.0113 0.203 0.205, 0.442 -1.67
C57BL/6J m 0.459 0.0551   107 0.00533 0.12 0.305, 0.57 1.08
CAST/EiJ m 0.417 0.0599   14 0.016 0.144 0.329, 0.507 0.36
DBA/2J m 0.336 0.039   39 0.00625 0.116 0.263, 0.426 -1.03
FVB/NJ m 0.387 0.0617   36 0.0103 0.159 0.263, 0.527 -0.16
NOD/ShiLtJ m 0.502 0.0698   37 0.0115 0.139 0.337, 0.626 1.82
PWK/PhJ m 0.365 0.0512   15 0.0132 0.14 0.252, 0.443 -0.54
WSB/EiJ m 0.435 0.0841   14 0.0225 0.193 0.323, 0.593 0.67


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.3556 0.0075 0.3703 0.3409
A/J m 0.378 0.0088 0.3952 0.3607
BALB/cByJ m 0.4237 0.0087 0.4408 0.4067
C3H/HeJ m 0.2992 0.0107 0.3202 0.2782
C57BL/6J m 0.4591 0.0056 0.47 0.4482
CAST/EiJ m 0.4174 0.0154 0.4476 0.3871
DBA/2J m 0.3357 0.0092 0.3539 0.3176
FVB/NJ m 0.3874 0.0096 0.4062 0.3685
NOD/ShiLtJ m 0.5021 0.0095 0.5207 0.4835
PWK/PhJ m 0.3655 0.0149 0.3947 0.3363
WSB/EiJ m 0.4348 0.0154 0.4651 0.4046




  GWAS USING LINEAR MIXED MODELS