Project measure / variable:   Loos2   long_shelter_fraction

ID, description, units MPD:54075   long_shelter_fraction   fraction of shelter visits (sheltering) with duration longer than long shelter visit threshold, over 3 days of testing, log10 transformed   [log(ratio)]  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
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  STRAIN COMPARISON PLOT
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Loos2 - fraction of shelter visits (sheltering) with duration longer than long shelter visit threshold, over 3 days of testing, log10 transformed



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means0.0337   log(ratio)
Median of the strain means0.0258   log(ratio)
SD of the strain means± 0.0279
Coefficient of variation (CV)0.826
Min–max range of strain means0.00694   –   0.109   log(ratio)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 0.2591 0.0259 106.9752 < 0.0001
Residuals 426 0.1032 0.0002


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.0489 0.0238   59 0.0031 0.487 0.017, 0.136 0.54
A/J m 0.0115 0.00465   43 0.000709 0.406 0.000434, 0.0204 -0.8
BALB/cByJ m 0.00694 0.00362   44 0.000545 0.521 0.000434, 0.0175 -0.96
C3H/HeJ m 0.109 0.0318   29 0.00591 0.291 0.0625, 0.177 2.7
C57BL/6J m 0.0235 0.00937   107 0.000906 0.4 0.00752, 0.0719 -0.37
CAST/EiJ m 0.0272 0.00845   14 0.00226 0.311 0.0161, 0.0452 -0.23
DBA/2J m 0.0462 0.022   39 0.00352 0.476 0.00784, 0.111 0.45
FVB/NJ m 0.0258 0.0112   36 0.00186 0.433 0.00989, 0.0539 -0.28
NOD/ShiLtJ m 0.0211 0.0104   37 0.00171 0.491 0.00232, 0.064 -0.45
PWK/PhJ m 0.0246 0.00964   15 0.00249 0.392 0.0109, 0.0432 -0.33
WSB/EiJ m 0.0264 0.0132   14 0.00352 0.499 0.0128, 0.0613 -0.26


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.0489 0.002 0.0529 0.0449
A/J m 0.0115 0.0024 0.0161 0.0068
BALB/cByJ m 0.0069 0.0023 0.0116 0.0023
C3H/HeJ m 0.1093 0.0029 0.115 0.1036
C57BL/6J m 0.0235 0.0015 0.0264 0.0205
CAST/EiJ m 0.0272 0.0042 0.0353 0.019
DBA/2J m 0.0462 0.0025 0.0511 0.0413
FVB/NJ m 0.0258 0.0026 0.0309 0.0207
NOD/ShiLtJ m 0.0211 0.0026 0.0261 0.0161
PWK/PhJ m 0.0246 0.004 0.0325 0.0167
WSB/EiJ m 0.0264 0.0042 0.0346 0.0182




  GWAS USING LINEAR MIXED MODELS