Project measure / variable:   Loos2   short_shelter_dur_LT

ID, description, units MPD:54082   short_shelter_dur_LT   short shelter visit, duration   [log(s)]  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
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  STRAIN COMPARISON PLOT
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Loos2 - short shelter visit, duration



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means2.02   log(s)
Median of the strain means1.99   log(s)
SD of the strain means± 0.276
Coefficient of variation (CV)0.137
Min–max range of strain means1.62   –   2.46   log(s)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 28.7887 2.8789 10.2483 < 0.0001
Residuals 426 119.6689 0.2809


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.79 0.635   59 0.0827 0.356 -0.82
A/J m 2.02 0.678   43 0.103 0.335 0.01
BALB/cByJ m 1.99 0.517   44 0.0779 0.259 0.342, 2.95 -0.1
C3H/HeJ m 1.62 0.89   29 0.165 0.549 -1.44
C57BL/6J m 2.22 0.31   107 0.03 0.14 0.97, 2.81 0.74
CAST/EiJ m 2.27 0.287   14 0.0767 0.126 1.81, 2.66 0.92
DBA/2J m 1.64 0.615   39 0.0984 0.374 -1.37
FVB/NJ m 2.46 0.329   36 0.0549 0.134 1.63, 3.15 1.61
NOD/ShiLtJ m 2.32 0.348   37 0.0572 0.15 0.988, 2.89 1.1
PWK/PhJ m 1.94 0.61   15 0.157 0.315 -0.28
WSB/EiJ m 1.92 0.578   14 0.154 0.301 0.988, 2.84 -0.35


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.7861 0.069 1.9217 1.6505
A/J m 2.0234 0.0808 2.1823 1.8646
BALB/cByJ m 1.9938 0.0799 2.1508 1.8367
C3H/HeJ m 1.6219 0.0984 1.8154 1.4285
C57BL/6J m 2.2169 0.0512 2.3176 2.1162
CAST/EiJ m 2.2702 0.1417 2.5486 1.9918
DBA/2J m 1.6428 0.0849 1.8097 1.476
FVB/NJ m 2.4567 0.0883 2.6303 2.283
NOD/ShiLtJ m 2.3225 0.0871 2.4938 2.1512
PWK/PhJ m 1.9352 0.1368 2.2042 1.6662
WSB/EiJ m 1.9196 0.1417 2.198 1.6412




  GWAS USING LINEAR MIXED MODELS