Phenotype measure:   Loos2   short_shelter_threshold

ID, description, units MPD:54083   short_shelter_threshold   cut-off value to separate short and intermediate shelter visits (sheltering), over 3 days of testing   [log(s)]
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
Ontology mappings


  STRAIN COMPARISON PLOT
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Loos2 - cut-off value to separate short and intermediate shelter visits (sheltering), over 3 days of testing



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means4.56   log(s)
Median of the strain means4.80   log(s)
SD of the strain means± 0.925
Coefficient of variation (CV)0.203
Min–max range of strain means2.87   –   6.43   log(s)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 304.7581 30.4758 31.3519 < 0.0001
Residuals 426 414.096 0.9721


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 4.03 1.61   59 0.21 0.401 1.22, 7.19 -0.57
A/J m 3.48 1.23   43 0.187 0.353 1.25, 5.54 -1.16
BALB/cByJ m 2.87 0.957   44 0.144 0.334 1.37, 4.88 -1.82
C3H/HeJ m 6.43 0.985   29 0.183 0.153 2.57, 7.59 2.03
C57BL/6J m 4.53 0.525   107 0.0508 0.116 3.09, 5.6 -0.03
CAST/EiJ m 4.93 0.956   14 0.256 0.194 3.29, 6.68 0.4
DBA/2J m 5.08 0.789   39 0.126 0.155 3.05, 6.73 0.57
FVB/NJ m 4.82 0.853   36 0.142 0.177 1.85, 6.05 0.29
NOD/ShiLtJ m 4.23 0.547   37 0.09 0.129 2.88, 5.21 -0.35
PWK/PhJ m 4.91 0.891   15 0.23 0.181 3.34, 6.12 0.38
WSB/EiJ m 4.8 1.28   14 0.343 0.268 2.7, 6.67 0.26


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 4.0255 0.1284 4.2778 3.7732
A/J m 3.4783 0.1504 3.7739 3.1828
BALB/cByJ m 2.8657 0.1486 3.1579 2.5736
C3H/HeJ m 6.4287 0.1831 6.7885 6.0688
C57BL/6J m 4.5267 0.0953 4.714 4.3393
CAST/EiJ m 4.9258 0.2635 5.4437 4.4079
DBA/2J m 5.0759 0.1579 5.3862 4.7656
FVB/NJ m 4.8241 0.1643 5.147 4.5011
NOD/ShiLtJ m 4.2289 0.1621 4.5475 3.9104
PWK/PhJ m 4.9088 0.2546 5.4092 4.4084
WSB/EiJ m 4.7956 0.2635 5.3135 4.2776




  GENOME-WIDE ASSOCIATION (GWAS) VIEW
Plot generated with pyLMM using 132K SNP array. Click on plot to view at larger size.