Phenotype measure:   Loos2   activity_dur_DKLT_index

ID, description, units MPD:54011   activity_dur_DKLT_index   dark-light index describing difference in cumulative activity duration between light and dark phase, over 3 days of testing   [ratio]
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
Ontology mappings

  STRAIN COMPARISON PLOT
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Loos2 - dark-light index describing difference in cumulative activity duration between light and dark phase, over 3 days of testing



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means0.820   ratio
Median of the strain means0.861   ratio
SD of the strain means± 0.0909
Coefficient of variation (CV)0.111
Min–max range of strain means0.622   –   0.920   ratio
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 2.9108 0.2911 29.2095 < 0.0001
Residuals 426 4.2451 0.01


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.799 0.136   59 0.0178 0.171 0.458, 0.984 -0.23
A/J m 0.92 0.077   43 0.0117 0.0836 0.595, 1.0 1.1
BALB/cByJ m 0.893 0.0666   44 0.01 0.0746 0.757, 0.98 0.81
C3H/HeJ m 0.727 0.111   29 0.0206 0.153 0.366, 0.888 -1.02
C57BL/6J m 0.872 0.0779   107 0.00753 0.0893 0.374, 0.97 0.57
CAST/EiJ m 0.731 0.0385   14 0.0103 0.0527 0.638, 0.785 -0.98
DBA/2J m 0.881 0.165   39 0.0265 0.188 0.338, 0.994 0.67
FVB/NJ m 0.622 0.0939   36 0.0157 0.151 0.469, 0.786 -2.18
NOD/ShiLtJ m 0.843 0.074   37 0.0122 0.0878 0.614, 0.96 0.26
PWK/PhJ m 0.861 0.064   15 0.0165 0.0743 0.661, 0.924 0.45
WSB/EiJ m 0.869 0.0944   14 0.0252 0.109 0.641, 0.974 0.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.7988 0.013 0.8243 0.7732
A/J m 0.9202 0.0152 0.9502 0.8903
BALB/cByJ m 0.8931 0.015 0.9226 0.8635
C3H/HeJ m 0.7272 0.0185 0.7636 0.6908
C57BL/6J m 0.8722 0.0097 0.8912 0.8533
CAST/EiJ m 0.7311 0.0267 0.7835 0.6787
DBA/2J m 0.8811 0.016 0.9125 0.8496
FVB/NJ m 0.6224 0.0166 0.6551 0.5897
NOD/ShiLtJ m 0.8431 0.0164 0.8754 0.8109
PWK/PhJ m 0.8612 0.0258 0.9118 0.8105
WSB/EiJ m 0.869 0.0267 0.9215 0.8166




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.