Phenotype measure:   Loos2   long_arrest_threshold

ID, description, units MPD:54062   long_arrest_threshold   cut-off value to separate short and long arrests, over 3 days of testing, log10 transformed   [log(s)]
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
Ontology mappings


  STRAIN COMPARISON PLOT
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Loos2 - cut-off value to separate short and long arrests, over 3 days of testing, log10 transformed



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means0.784   log(s)
Median of the strain means0.782   log(s)
SD of the strain means± 0.0989
Coefficient of variation (CV)0.126
Min–max range of strain means0.631   –   0.941   log(s)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 3.0427 0.3043 51.249 < 0.0001
Residuals 426 2.5292 0.0059


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.78 0.106   59 0.0138 0.136 0.623, 1.16 -0.04
A/J m 0.747 0.0542   43 0.00826 0.0725 0.63, 0.881 -0.37
BALB/cByJ m 0.631 0.0559   44 0.00843 0.0886 0.54, 0.763 -1.54
C3H/HeJ m 0.878 0.0641   29 0.0119 0.073 0.753, 1.03 0.96
C57BL/6J m 0.784 0.0693   107 0.0067 0.0885 0.623, 0.967 0.0
CAST/EiJ m 0.788 0.0953   14 0.0255 0.121 0.623, 0.934 0.05
DBA/2J m 0.92 0.0766   39 0.0123 0.0832 0.763, 1.07 1.38
FVB/NJ m 0.782 0.0609   36 0.0101 0.0779 0.637, 0.903 -0.02
NOD/ShiLtJ m 0.662 0.0557   37 0.00916 0.0842 0.556, 0.792 -1.23
PWK/PhJ m 0.941 0.123   15 0.0318 0.131 0.743, 1.25 1.59
WSB/EiJ m 0.706 0.124   14 0.0332 0.176 0.564, 1.03 -0.78


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.7802 0.01 0.7999 0.7604
A/J m 0.7474 0.0118 0.7705 0.7243
BALB/cByJ m 0.6308 0.0116 0.6536 0.608
C3H/HeJ m 0.8776 0.0143 0.9057 0.8495
C57BL/6J m 0.7838 0.0074 0.7985 0.7692
CAST/EiJ m 0.7882 0.0206 0.8287 0.7477
DBA/2J m 0.9202 0.0123 0.9444 0.8959
FVB/NJ m 0.7817 0.0128 0.807 0.7565
NOD/ShiLtJ m 0.6618 0.0127 0.6867 0.6369
PWK/PhJ m 0.941 0.0199 0.9802 0.9019
WSB/EiJ m 0.7063 0.0206 0.7468 0.6658




  GENOME-WIDE ASSOCIATION (GWAS) VIEW
Plot generated with pyLMM using 132K SNP array. Click on plot to view at larger size.