Project measure / variable:   Loos2   long_arrest_dur_DK

ID, description, units MPD:54056   long_arrest_dur_DK   cumulative duration of long arrests during dark phase, over 3 days of testing, log10 transformed   [log(s)]  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
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  STRAIN COMPARISON PLOT
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Loos2 - cumulative duration of long arrests during dark phase, over 3 days of testing, log10 transformed



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means4.05   log(s)
Median of the strain means4.07   log(s)
SD of the strain means± 0.157
Coefficient of variation (CV)0.0386
Min–max range of strain means3.75   –   4.34   log(s)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 6.8859 0.6886 47.7041 < 0.0001
Residuals 426 6.1491 0.0144


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 3.94 0.165   59 0.0215 0.0419 3.69, 4.28 -0.71
A/J m 4.07 0.118   43 0.018 0.029 3.77, 4.3 0.12
BALB/cByJ m 3.98 0.101   44 0.0152 0.0254 3.78, 4.15 -0.46
C3H/HeJ m 4.17 0.107   29 0.0198 0.0256 3.93, 4.33 0.76
C57BL/6J m 4.04 0.0787   107 0.00761 0.0195 3.81, 4.3 -0.08
CAST/EiJ m 4.09 0.0822   14 0.022 0.0201 3.98, 4.27 0.24
DBA/2J m 4.19 0.0852   39 0.0136 0.0203 4.02, 4.38 0.88
FVB/NJ m 3.75 0.132   36 0.022 0.0352 3.49, 4.17 -1.93
NOD/ShiLtJ m 3.92 0.18   37 0.0296 0.0459 3.74, 4.41 -0.84
PWK/PhJ m 4.34 0.0642   15 0.0166 0.0148 4.24, 4.44 1.84
WSB/EiJ m 4.08 0.167   14 0.0447 0.041 3.77, 4.36 0.18


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 3.9443 0.0156 3.9751 3.9136
A/J m 4.069 0.0183 4.1051 4.033
BALB/cByJ m 3.9802 0.0181 4.0158 3.9446
C3H/HeJ m 4.1733 0.0223 4.2172 4.1295
C57BL/6J m 4.0411 0.0116 4.0639 4.0182
CAST/EiJ m 4.0932 0.0321 4.1563 4.0301
DBA/2J m 4.1859 0.0192 4.2238 4.1481
FVB/NJ m 3.7544 0.02 3.7937 3.715
NOD/ShiLtJ m 3.923 0.0198 3.9618 3.8842
PWK/PhJ m 4.3443 0.031 4.4053 4.2834
WSB/EiJ m 4.0776 0.0321 4.1407 4.0145




  GWAS USING LINEAR MIXED MODELS