MPD: Phenotype measures mapped to VT:0100006, anatomical relation trait

Phenotype measures associated with ontology term
VT:0100006 'anatomical relation trait'

All measures in this list are mapped to the ontology descendants of VT:0100006. None are mapped to VT:0100006 directly.

VT:0000004 forelimb conformation trait
VT:0000016 hindlimb conformation trait
VT:1000000 body conformation trait
VT:1000738 limb conformation trait

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
GMC03:13	GMC03	observation (SHIRPA)	(none)	body position (0=inactive, 1=active, 2=excessively active) [score] body_pos 55213	inbred w/CC8	8	both	8-10wks	N=17	2018

GMC03:14	GMC03	observation (SHIRPA)	(none)	pelvic elevation (0=less than 5, 1=5 or more, 2=no data) [score] pelvic_elev 55214	inbred w/CC8	8	both	8-10wks	N=17	2018

GMC03:15	GMC03	observation (SHIRPA)	(none)	tail elevation (0=dragging, 1=horizontal, 2=elevated) [score] tail_elev 55215	inbred w/CC8	8	both	8-10wks	N=17	2018

GMC03:43	GMC03	observation (SHIRPA)	(none)	positional passivity (0=struggle, 3=no) [score] pos_pass 55243	inbred w/CC8	8	both	8-10wks	N=17	2018

JaxKOMP-EAP:65	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimbs position forelimbs_position 100359 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:68	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimbs position hindlimbs_position 100362 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:78	JaxKOMP-EAP	observation (SHIRPA)	(none)	activity body position activity_body_position 100372 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:123	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimbs shape forelimbs_shape 100417 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:127	JaxKOMP-EAP	observation (SHIRPA)	(none)	body position body_position 100421 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:135	JaxKOMP-EAP	observation (SHIRPA)	(none)	trunk curl trunk_curl 100429 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-LAP:54	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimbs position forelimbs_position 101359 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:57	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimbs position hindlimbs_position 101362 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:67	JaxKOMP-LAP	observation (SHIRPA)	(none)	activity body position activity_body_position 101372 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:112	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimbs shape forelimbs_shape 101417 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:116	JaxKOMP-LAP	observation (SHIRPA)	(none)	body position body_position 101421 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:124	JaxKOMP-LAP	observation (SHIRPA)	(none)	trunk curl trunk_curl 101429 categorical	KOMP	148	both	66-72wks		2021

Jaxpheno7:1	Jaxpheno7	observation (SHIRPA)	(none)	body position in view-jar (score 0-5) [score] body_position 34901	inbred	6	m	10wks	N=8	2010

Jaxpheno7:2	Jaxpheno7	observation (SHIRPA)	(none)	degree of pelvis elevation while in motion in arena (score 0-3) [score] pelvic_elevation 34902	inbred	6	m	10wks	N=8	2010

Jaxpheno7:3	Jaxpheno7	observation (SHIRPA)	(none)	degree of tail elevation while in forward motion in arena (score 0-4) [score] tail_elevation 34903	inbred	6	m	10wks	N=8	2010

Jaxpheno7:5	Jaxpheno7	observation (SHIRPA)	(none)	hindlimb splay evaluation via dorso-ventral view in arena (score 0-2) [score] hindlimb_dorsal 34905	inbred	6	m	10wks	N=8	2010

Jaxpheno7:6	Jaxpheno7	observation (SHIRPA)	(none)	hindlimb splay evaluation via vertical view in arena (score 0-2) [score] limb_pattern 34906	inbred	6	m	10wks	N=8	2010

Jaxpheno7:29	Jaxpheno7	observation (SHIRPA)	(none)	postural response to being held in different positions above arena (score 0-4) [score] positional_passivity 34929	inbred	6	m	10wks	N=8	2010

Lake2:10	Lake2	observation (SHIRPA)	(none)	degree of pelvis elevation while in motion in arena (score 0-3) [score] pelvic_elevation 21710	B6.A consomic w/par	23	both	8wks	N=8	2005

Lake2:11	Lake2	observation (SHIRPA)	(none)	degree of tail elevation while in forward motion in arena (score 0-4) [score] tail_elevation 21711	B6.A consomic w/par	23	both	8wks	N=8	2005

Lake2:14	Lake2	observation (SHIRPA)	(none)	postural response to being held in different positions above arena (score 0-4) [score] positional_passivity 21714	B6.A consomic w/par	23	both	8wks	N=8	2005

Lake2:18	Lake2	observation (SHIRPA)	(none)	response to rotation while held in extension by the tail with forelimbs gripping (wire maneuver) (score 0-4) [score] hindlimb_rotation 21718	B6.A consomic w/par	23	both	8wks	N=8	2005

Lake2:42	Lake2	observation (SHIRPA)	(none)	body position in view-jar (score 0-5) [score] body_position 21742	B6.A consomic w/par	23	both	8wks	N=8	2005

Lake2:43	Lake2	observation (SHIRPA)	(none)	hindlimb splay evaluation via dorso-ventral view in arena (score 0-2) [score] hindlimb_dorsal 21743	B6.A consomic w/par	23	both	8wks	N=8	2005

Lake2:44	Lake2	observation (SHIRPA)	(none)	distance between ankle joints during tail suspension (score 0-2) [score] hindlimb_susp 21744	B6.A consomic w/par	23	both	8wks	N=8	2005

Seburn2:5	Seburn2	gait analysis	(none)	stance phase, mean time that either front paw is in contact with surface during a step [ms] stance_F 24805 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:9	Seburn2	gait analysis	(none)	swing phase, mean time that either front paw is not in contact with the surface during a step [ms] swing_F 24809 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:13	Seburn2	gait analysis	(none)	stride time, mean time between consecutive front paw contacts [ms] stride_F 24813 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:17	Seburn2	gait analysis	(none)	stance-to-stride ratio, mean for front paws [ratio] stance_stride_F 24817 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:21	Seburn2	gait analysis	(none)	swing-to-stride ratio, mean for front paws [ratio] swing_stride_F 24821 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:25	Seburn2	gait analysis	(none)	stride length, mean distance between consecutive front paw contacts [mm] stride_length_F 24825 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:33	Seburn2	gait analysis	(none)	front track width, mean distance between front paws at midpoint of stance phase [mm] track_width_F 24833 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:39	Seburn2	gait analysis	(none)	stride frequency, mean number of steps per second for front paws [Hz] stride_freq_F 24839 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:45	Seburn2	gait analysis	(none)	stance phase, mean time that either rear paw is in contact with surface during a step [ms] stance_R 24845 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:49	Seburn2	gait analysis	(none)	swing phase, mean time that either rear paw is not in contact with the surface during a step [ms] swing_R 24849 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:53	Seburn2	gait analysis	(none)	stride time, mean time between consecutive rear paw contacts [ms] stride_R 24853 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:57	Seburn2	gait analysis	(none)	stance-to-stride ratio, mean for rear paws [ratio] stance_stride_R 24857 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:61	Seburn2	gait analysis	(none)	swing-to-stride ratio, mean for rear paws [ratio] swing_stride_R 24861 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:65	Seburn2	gait analysis	(none)	stride length, mean distance between consecutive rear paw contacts [mm] stride_length_R 24865 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:73	Seburn2	gait analysis	(none)	front track width, mean distance between rear paws at midpoint of stance phase [mm] rear_track_width_R 24873 6mo 18mo	inbred	7	both		N=6	2008

Seburn2:79	Seburn2	gait analysis	(none)	stride frequency, mean number of steps per second for rear paws [Hz] stride_freq_R 24879 6mo 18mo	inbred	7	both		N=6	2008

Xing2:4	Xing2	gait analysis	(none)	gait score (1-3) [score] gait_score 36304 6mo 12mo 18mo	inbred	31	both		N=7	2010

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