Phenotype measure:   Lake2   body_position

ID, description, units MPD:21742   body_position   body position in view-jar (score 0-5)   [score]
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
Procedure observation (SHIRPA)
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake2 - body position in view-jar (score 0-5)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means3.93   score 3.97   score
Median of the strain means4.00   score 4.00   score
SD of the strain means± 0.174 ± 0.0843
Coefficient of variation (CV)0.0442 0.0212
Min–max range of strain means3.31   –   4.00   score 3.62   –   4.00   score
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.4598 0.4598 12.2971 0.0005
strain 22 7.9462 0.3612 9.6605 < 0.0001
sex:strain 22 1.5237 0.0693 1.8524 0.0121
Residuals 336 12.5625 0.0374


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 3.31 0.479   16 0.12 0.145 3.0, 4.0 -3.58
A/J m 3.62 0.518   8 0.183 0.143 3.0, 4.0 -4.19
B6.A-Chr1 f 3.88 0.354   8 0.125 0.0912 3.0, 4.0 -0.3
B6.A-Chr1 m 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.32
B6.A-Chr10 f 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.39
B6.A-Chr10 m 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.32
B6.A-Chr11 f 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.39
B6.A-Chr11 m 4.0 0.0   10 0.0 0.0 4.0, 4.0 0.32
B6.A-Chr12 f 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.39
B6.A-Chr12 m 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.32
B6.A-Chr13 f 4.0 0.0   5 0.0 0.0 4.0, 4.0 0.39
B6.A-Chr13 m 4.0 0.0   7 0.0 0.0 4.0, 4.0 0.32
B6.A-Chr14 f 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.39
B6.A-Chr14 m 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.32
B6.A-Chr15 f 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.39
B6.A-Chr15 m 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.32
B6.A-Chr16 f 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.39
B6.A-Chr16 m 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.32
B6.A-Chr17 f 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.39
B6.A-Chr17 m 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.32
B6.A-Chr18 f 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.39
B6.A-Chr18 m 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.32
B6.A-Chr19 f 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.39
B6.A-Chr19 m 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.32
B6.A-Chr2 f 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.39
B6.A-Chr2 m 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.32
B6.A-Chr3 f 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.39
B6.A-Chr3 m 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.32
B6.A-Chr4 f 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.39
B6.A-Chr4 m 3.88 0.354   8 0.125 0.0912 3.0, 4.0 -1.1
B6.A-Chr5 f 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.39
B6.A-Chr5 m 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.32
B6.A-Chr6 f 3.5 0.535   8 0.189 0.153 3.0, 4.0 -2.49
B6.A-Chr6 m 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.32
B6.A-Chr7 f 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.39
B6.A-Chr7 m 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.32
B6.A-Chr8 f 3.88 0.354   8 0.125 0.0912 3.0, 4.0 -0.3
B6.A-Chr8 m 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.32
B6.A-Chr9 f 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.39
B6.A-Chr9 m 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.32
B6.A-ChrX f 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.39
B6.A-ChrX m 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.32
B6.A-ChrY f 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.39
B6.A-ChrY m 4.0 0.0   8 0.0 0.0 4.0, 4.0 0.32
C57BL/6J f 3.88 0.342   16 0.0854 0.0881 3.0, 4.0 -0.3
C57BL/6J m 3.88 0.354   8 0.125 0.0912 3.0, 4.0 -1.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 3.3125 0.0483 3.4076 3.2174
A/J m 3.625 0.0684 3.7595 3.4905
B6.A-Chr1 f 3.875 0.0684 4.0095 3.7405
B6.A-Chr1 m 4.0 0.0684 4.1345 3.8655
B6.A-Chr10 f 4.0 0.0684 4.1345 3.8655
B6.A-Chr10 m 4.0 0.0684 4.1345 3.8655
B6.A-Chr11 f 4.0 0.0684 4.1345 3.8655
B6.A-Chr11 m 4.0 0.0611 4.1203 3.8797
B6.A-Chr12 f 4.0 0.0684 4.1345 3.8655
B6.A-Chr12 m 4.0 0.0684 4.1345 3.8655
B6.A-Chr13 f 4.0 0.0865 4.1701 3.8299
B6.A-Chr13 m 4.0 0.0731 4.1438 3.8562
B6.A-Chr14 f 4.0 0.0684 4.1345 3.8655
B6.A-Chr14 m 4.0 0.0684 4.1345 3.8655
B6.A-Chr15 f 4.0 0.0684 4.1345 3.8655
B6.A-Chr15 m 4.0 0.0684 4.1345 3.8655
B6.A-Chr16 f 4.0 0.0684 4.1345 3.8655
B6.A-Chr16 m 4.0 0.0684 4.1345 3.8655
B6.A-Chr17 f 4.0 0.0684 4.1345 3.8655
B6.A-Chr17 m 4.0 0.0684 4.1345 3.8655
B6.A-Chr18 f 4.0 0.0684 4.1345 3.8655
B6.A-Chr18 m 4.0 0.0684 4.1345 3.8655
B6.A-Chr19 f 4.0 0.0684 4.1345 3.8655
B6.A-Chr19 m 4.0 0.0684 4.1345 3.8655
B6.A-Chr2 f 4.0 0.0684 4.1345 3.8655
B6.A-Chr2 m 4.0 0.0684 4.1345 3.8655
B6.A-Chr3 f 4.0 0.0684 4.1345 3.8655
B6.A-Chr3 m 4.0 0.0684 4.1345 3.8655
B6.A-Chr4 f 4.0 0.0684 4.1345 3.8655
B6.A-Chr4 m 3.875 0.0684 4.0095 3.7405
B6.A-Chr5 f 4.0 0.0684 4.1345 3.8655
B6.A-Chr5 m 4.0 0.0684 4.1345 3.8655
B6.A-Chr6 f 3.5 0.0684 3.6345 3.3655
B6.A-Chr6 m 4.0 0.0684 4.1345 3.8655
B6.A-Chr7 f 4.0 0.0684 4.1345 3.8655
B6.A-Chr7 m 4.0 0.0684 4.1345 3.8655
B6.A-Chr8 f 3.875 0.0684 4.0095 3.7405
B6.A-Chr8 m 4.0 0.0684 4.1345 3.8655
B6.A-Chr9 f 4.0 0.0684 4.1345 3.8655
B6.A-Chr9 m 4.0 0.0684 4.1345 3.8655
B6.A-ChrX f 4.0 0.0684 4.1345 3.8655
B6.A-ChrX m 4.0 0.0684 4.1345 3.8655
B6.A-ChrY f 4.0 0.0684 4.1345 3.8655
B6.A-ChrY m 4.0 0.0684 4.1345 3.8655
C57BL/6J f 3.875 0.0483 3.9701 3.7799
C57BL/6J m 3.875 0.0684 4.0095 3.7405


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 3.4688 0.0419 3.5511 3.3864
B6.A-Chr1 both 3.9375 0.0483 4.0326 3.8424
B6.A-Chr10 both 4.0 0.0483 4.0951 3.9049
B6.A-Chr11 both 4.0 0.0459 4.0902 3.9098
B6.A-Chr12 both 4.0 0.0483 4.0951 3.9049
B6.A-Chr13 both 4.0 0.0566 4.1114 3.8886
B6.A-Chr14 both 4.0 0.0483 4.0951 3.9049
B6.A-Chr15 both 4.0 0.0483 4.0951 3.9049
B6.A-Chr16 both 4.0 0.0483 4.0951 3.9049
B6.A-Chr17 both 4.0 0.0483 4.0951 3.9049
B6.A-Chr18 both 4.0 0.0483 4.0951 3.9049
B6.A-Chr19 both 4.0 0.0483 4.0951 3.9049
B6.A-Chr2 both 4.0 0.0483 4.0951 3.9049
B6.A-Chr3 both 4.0 0.0483 4.0951 3.9049
B6.A-Chr4 both 3.9375 0.0483 4.0326 3.8424
B6.A-Chr5 both 4.0 0.0483 4.0951 3.9049
B6.A-Chr6 both 3.75 0.0483 3.8451 3.6549
B6.A-Chr7 both 4.0 0.0483 4.0951 3.9049
B6.A-Chr8 both 3.9375 0.0483 4.0326 3.8424
B6.A-Chr9 both 4.0 0.0483 4.0951 3.9049
B6.A-ChrX both 4.0 0.0483 4.0951 3.9049
B6.A-ChrY both 4.0 0.0483 4.0951 3.9049
C57BL/6J both 3.875 0.0419 3.9573 3.7927




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA