Project measure / variable:   GMC03   tail_elev

ID, description, units MPD:55215   tail_elev   tail elevation (0=dragging, 1=horizontal, 2=elevated)   [score]  
Data set, strains GMC03   inbred w/CC8   8 strains     sex: both     age: 8-10wks
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  STRAIN COMPARISON PLOT
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GMC03 - tail elevation (0=dragging, 1=horizontal, 2=elevated)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means0.776   score 0.812   score
Median of the strain means0.900   score 0.978   score
SD of the strain means± 0.337 ± 0.316
Coefficient of variation (CV)0.434 0.389
Min–max range of strain means0.188   –   1.12   score 0.235   –   1.12   score
Mean sample size per strain17.5   mice 17.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.064 0.064 0.6171 0.4328
strain 7 24.2368 3.4624 33.3779 < 0.0001
sex:strain 7 0.7683 0.1098 1.0581 0.3911
Residuals 260 26.9707 0.1037


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.75 0.447   16 0.112 0.596 -0.08
129S1/SvImJ m 0.75 0.447   16 0.112 0.596 -0.2
A/J f 0.188 0.403   16 0.101 2.15 -1.75
A/J m 0.438 0.512   16 0.128 1.17 -1.19
C57BL/6J f 1.12 0.342   16 0.0854 0.304 1.0, 2.0 1.02
C57BL/6J m 1.12 0.342   16 0.0854 0.304 1.0, 2.0 0.97
CAST/EiJ f 1.0 0.0   19 0.0 0.0 1.0, 1.0 0.66
CAST/EiJ m 1.0 0.0   17 0.0 0.0 1.0, 1.0 0.59
NOD/ShiLtJ f 1.0 0.0   18 0.0 0.0 1.0, 1.0 0.66
NOD/ShiLtJ m 1.0 0.0   16 0.0 0.0 1.0, 1.0 0.59
NZO/HlLtJ f 0.353 0.493   17 0.119 1.4 -1.26
NZO/HlLtJ m 0.235 0.437   17 0.106 1.86 -1.83
PWK/PhJ f 0.8 0.41   20 0.0918 0.513 0.07
PWK/PhJ m 0.955 0.213   22 0.0455 0.223 0.45
WSB/EiJ f 1.0 0.0   18 0.0 0.0 1.0, 1.0 0.66
WSB/EiJ m 1.0 0.0   16 0.0 0.0 1.0, 1.0 0.59


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.75 0.0805 0.9086 0.5914
129S1/SvImJ m 0.75 0.0805 0.9086 0.5914
A/J f 0.1875 0.0805 0.3461 0.0289
A/J m 0.4375 0.0805 0.5961 0.2789
C57BL/6J f 1.125 0.0805 1.2836 0.9664
C57BL/6J m 1.125 0.0805 1.2836 0.9664
CAST/EiJ f 1.0 0.0739 1.1455 0.8545
CAST/EiJ m 1.0 0.0781 1.1538 0.8462
NOD/ShiLtJ f 1.0 0.0759 1.1495 0.8505
NOD/ShiLtJ m 1.0 0.0805 1.1586 0.8414
NZO/HlLtJ f 0.3529 0.0781 0.5068 0.1991
NZO/HlLtJ m 0.2353 0.0781 0.3891 0.0815
PWK/PhJ f 0.8 0.072 0.9418 0.6582
PWK/PhJ m 0.9545 0.0687 1.0898 0.8193
WSB/EiJ f 1.0 0.0759 1.1495 0.8505
WSB/EiJ m 1.0 0.0805 1.1586 0.8414


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.75 0.0569 0.8621 0.6379
A/J both 0.3125 0.0569 0.4246 0.2004
C57BL/6J both 1.125 0.0569 1.2371 1.0129
CAST/EiJ both 1.0 0.0538 1.1059 0.8941
NOD/ShiLtJ both 1.0 0.0553 1.109 0.891
NZO/HlLtJ both 0.2941 0.0552 0.4029 0.1854
PWK/PhJ both 0.8773 0.0498 0.9752 0.7793
WSB/EiJ both 1.0 0.0553 1.109 0.891




  GWAS USING LINEAR MIXED MODELS