Project measure / variable:   Jaxpheno7   withdrawal_reflex

ID, description, units MPD:34937   withdrawal_reflex   withdrawal reflex following toe pinch of hind foot mid-digit on horizontal wire-grid (score 0-4)   [score]  
Data set, strains Jaxpheno7   inbred   6 strains     sex: m     age: 10wks
Procedure observation (SHIRPA)
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  STRAIN COMPARISON PLOT
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Jaxpheno7 - withdrawal reflex following toe pinch of hind foot mid-digit on horizontal wire-grid (score 0-4)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested6 strains
Mean of the strain means1.48   score
Median of the strain means1.53   score
SD of the strain means± 0.611
Coefficient of variation (CV)0.412
Min–max range of strain means0.667   –   2.36   score
Mean sample size per strain8.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 5 14.8913 2.9783 4.6166 0.0017
Residuals 45 29.0303 0.6451


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J m 1.33 0.516   6 0.211 0.387 1.0, 2.0 -0.25
AKR/J m 2.36 0.809   11 0.244 0.342 1.0, 3.0 1.43
BALB/cJ m 1.73 1.19   11 0.359 0.689 0.4
C3H/HeJ m 0.667 0.516   6 0.211 0.775 -1.34
C57BL/6J m 1.0 0.0   6 0.0 0.0 1.0, 1.0 -0.79
DBA/2J m 1.82 0.751   11 0.226 0.413 1.0, 3.0 0.55


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1.3333 0.3279 1.9938 0.6729
AKR/J m 2.3636 0.2422 2.8514 1.8759
BALB/cJ m 1.7273 0.2422 2.215 1.2395
C3H/HeJ m 0.6667 0.3279 1.3271 0.0062
C57BL/6J m 1.0 0.3279 1.6604 0.3396
DBA/2J m 1.8182 0.2422 2.3059 1.3304




  GWAS USING LINEAR MIXED MODELS