Project measure / variable:   Jaxpheno7   touch_escape

ID, description, units MPD:34933   touch_escape   touch provoked withdrawal (escape) reflex in arena (score 0-3)   [score]  
Data set, strains Jaxpheno7   inbred   6 strains     sex: m     age: 10wks
Procedure observation (SHIRPA)
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  STRAIN COMPARISON PLOT
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Jaxpheno7 - touch provoked withdrawal (escape) reflex in arena (score 0-3)

C57BL/6JC3H/HeJAKR/JDBA/2JA/JBALB/cJ score 1.01.21.41.61.82.02.22.42.62.83.0femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested6 strains
Mean of the strain means1.74   score
Median of the strain means1.82   score
SD of the strain means± 0.366
Coefficient of variation (CV)0.211
Min–max range of strain means1.27   –   2.17   score
Mean sample size per strain8.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 5 5.1488 1.0298 4.9092 0.0011
Residuals 45 9.4394 0.2098


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
A/J m 1.33 0.516   6 0.211 0.387 1.0, 2.0 -1.11
AKR/J m 1.91 0.539   11 0.163 0.283 1.0, 3.0 0.48
BALB/cJ m 1.27 0.467   11 0.141 0.367 1.0, 2.0 -1.27
C3H/HeJ m 2.0 0.0   6 0.0 0.0 2.0, 2.0 0.72
C57BL/6J m 2.17 0.408   6 0.167 0.188 2.0, 3.0 1.19
DBA/2J m 1.73 0.467   11 0.141 0.27 1.0, 2.0 -0.01


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1.3333 0.187 1.7099 0.9567
AKR/J m 1.9091 0.1381 2.1872 1.631
BALB/cJ m 1.2727 0.1381 1.5509 0.9946
C3H/HeJ m 2.0 0.187 2.3766 1.6234
C57BL/6J m 2.1667 0.187 2.5433 1.7901
DBA/2J m 1.7273 0.1381 2.0054 1.4491




  GWAS USING LINEAR MIXED MODELS

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