MPD: Phenotype measures mapped to VT:0015074, organ system trait

Phenotype measures in JaxKOMP-LAP associated with ontology term
VT:0015074 'organ system trait'

All measures in this list are mapped to the ontology descendants of VT:0015074. None are mapped to VT:0015074 directly.

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
JaxKOMP-LAP:41	JaxKOMP-LAP	observation (SHIRPA)	(none)	fat distribution fat_distribution 101346 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:42	JaxKOMP-LAP	observation (SHIRPA)	(none)	coat color back coat_color_back 101347 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:43	JaxKOMP-LAP	observation (SHIRPA)	(none)	coat color head coat_color_head 101348 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:44	JaxKOMP-LAP	observation (SHIRPA)	(none)	coat color abdomen coat_color_abdomen 101349 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:45	JaxKOMP-LAP	observation (SHIRPA)	(none)	coat color pattern back coat_color_pattern_back 101350 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:46	JaxKOMP-LAP	observation (SHIRPA)	(none)	coat color pattern abdomen coat_color_patterabdomen 101351 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:47	JaxKOMP-LAP	observation (SHIRPA)	(none)	coat color pattern head coat_color_patterhead 101352 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:48	JaxKOMP-LAP	observation (SHIRPA)	(none)	coat hair distribution back coat_hair_distribution_back 101353 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:49	JaxKOMP-LAP	observation (SHIRPA)	(none)	coat hair distribution head coat_hair_distribution_head 101354 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:50	JaxKOMP-LAP	observation (SHIRPA)	(none)	coat hair distribution abdomen coat_hair_distribution_abdomen 101355 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:51	JaxKOMP-LAP	observation (SHIRPA)	(none)	coat hair back texture appearance coat_hair_back_texture_appearance 101356 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:52	JaxKOMP-LAP	observation (SHIRPA)	(none)	coat hair head texture appearance coat_hair_head_texture_appearance 101357 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:53	JaxKOMP-LAP	observation (SHIRPA)	(none)	coat hair abdomen texture appearance coat_hair_abdomen_texture_appearance 101358 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:60	JaxKOMP-LAP	observation (SHIRPA)	(none)	vibrissae presence vibrissae_presence 101365 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:61	JaxKOMP-LAP	observation (SHIRPA)	(none)	vibrissae appearance vibrissae_appearance 101366 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:81	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb nail number forelimb_nail_number 101386 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:82	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimb nail number hindlimb_nail_number 101387 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:83	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb nail length forelimb_nail_length 101388 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:84	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimb nail length hindlimb_nail_length 101389 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:85	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb nail shape forelimb_nail_shape 101390 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:86	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimb nail shape hindlimb_nail_shape 101391 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:87	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimb digit position hindlimb_digit_position 101392 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:88	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb nail position forelimb_nail_position 101393 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:89	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimb nail position hindlimb_nail_position 101394 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:90	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin color whole body skin_color_whole_body 101395 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:91	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin color snout skin_color_snout 101396 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:92	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin color ear skin_color_ear 101397 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:93	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin color front paws skin_color_front_paws 101398 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:94	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin color back paws skin_color_back_paws 101399 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:95	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin color tail skin_color_tail 101400 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:96	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin texture whole body skin_texture_whole_body 101401 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:97	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin texture snout skin_texture_snout 101402 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:98	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin texture ear skin_texture_ear 101403 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:99	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin texture front paws skin_texture_front_paws 101404 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:100	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin texture back paw skin_texture_back_paw 101405 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:101	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin texture tail skin_texture_tail 101406 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:105	JaxKOMP-LAP	observation (SHIRPA)	(none)	genitalia presence genitalia_presence 101410 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:106	JaxKOMP-LAP	observation (SHIRPA)	(none)	genitalia size genitalia_size 101411 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:107	JaxKOMP-LAP	observation (SHIRPA)	(none)	genitalia morphology genitalia_morphology 101412 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:122	JaxKOMP-LAP	observation (SHIRPA)	(none)	startle response startle_response 101427 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:130	JaxKOMP-LAP	observation (SHIRPA)	(none)	salivation salivation 101435 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:131	JaxKOMP-LAP	grip strength	(none)	forelimb grip strength by trial [g] front_paws forelimb_strength 101561 trial1 trial2 trial3	KOMP	119	both	66-72wks	N=8	2021

JaxKOMP-LAP:134	JaxKOMP-LAP	grip strength	(none)	forelimb and hindlimb grip strength by trial [g] all_paws forehind_limb_strength 101564 trial1 trial2 trial3	KOMP	119	both	66-72wks	N=8	2021

JaxKOMP-LAP:138	JaxKOMP-LAP	grip strength	(none)	forelimb grip strength (mean of trials) [g] font_paws_mean forelimb_grip_mean 101571 average average normalized to bw	KOMP	119	both	66-72wks	N=8	2021

JaxKOMP-LAP:140	JaxKOMP-LAP	grip strength	(none)	forelimb and hindlimb grip strength (mean of trials) [g] all_paws_mean fore_and_hind_limb_grip_mean 101572 average average normalized to bw	KOMP	119	both	66-72wks	N=8	2021

JaxKOMP-LAP:176	JaxKOMP-LAP	acoustic startle test	(none)	average percent pre-pulse inhibition to full pulse (120 dB) preceded by pre-pulse [%] avg_ppi pct_ppi_ppN_avg 101517 pp1 pp2 pp3	KOMP	3	both	68-72wks	N=9	2018

JaxKOMP-LAP:183	JaxKOMP-LAP	acoustic startle test	(none)	corrected average percent pre-pulse inhibition to full pulse (120 dB) preceded by pre-pulse [%] avg_corrected_ppi corrected_percent_ppN_avg 101526 74 dB 78 dB 82 dB	KOMP	3	both	68-72wks	N=9	2018

JaxKOMP-LAP:186	JaxKOMP-LAP	acoustic startle test	(none)	average of each corrected percent pre-pulse inhibition value [%] avg_corrected_ppi_global corrected_ppi_global_avg 101530	KOMP	3	both	68-72wks	N=9	2018

JaxKOMP-LAP:191	JaxKOMP-LAP	acoustic startle test	(none)	maximum startle response to full pulse (120 dB) [mV] max_s s 101549	KOMP	3	both	68-72wks	N=9	2018

JaxKOMP-LAP:196	JaxKOMP-LAP	acoustic startle test	(none)	average of maximum percent pre-pulse inhibition for each pre-pulse tested [%] max_ppi_global pct_ppi_global 101543	KOMP		both	68-72wks		2018

JaxKOMP-LAP:201	JaxKOMP-LAP	acoustic startle test	(none)	corrected maximum percent pre-pulse inhibition to full pulse (120 dB) preceded by pre-pulse [%] max_corrected_ppi corrected_percent_ppN_vmax 101555 pp1 pp2 pp3	KOMP	3	both	68-72wks	N=9	2018

JaxKOMP-LAP:204	JaxKOMP-LAP	acoustic startle test	(none)	average of each corrected maximum percent pre-pulse inhibition value [%] max_corrected_ppi_global corrected_ppi_global_vmax 101559	KOMP	3	both	68-72wks	N=9	2018

JaxKOMP-LAP:205	JaxKOMP-LAP	ECG	(none)	heart rate coefficient of variation (signal intensity) [%] HR_CV cv 101181 IMPC_ECG_003_001	KOMP	48	both	69-75wks	N=7	2019

JaxKOMP-LAP:206	JaxKOMP-LAP	ECG	(none)	heart rate, beats per min [n/min] HR hr 101182 IMPC_ECG_002_001	KOMP	48	both	69-75wks	N=7	2019

JaxKOMP-LAP:207	JaxKOMP-LAP	ECG	(none)	heart rate variability, mean of differences between sequential beats; beats per min [n/min] HR_V hrv 101183 IMPC_ECG_010_001	KOMP	48	both	69-75wks	N=7	2019

JaxKOMP-LAP:208	JaxKOMP-LAP	ECG	(none)	mean R amplitude, mean amplitude of signal measured from isoelectric line to peak of QRS [mV] R_amplitude mean_r_amplitude 101184 IMPC_ECG_013_001	KOMP	48	both	69-75wks	N=7	2019

JaxKOMP-LAP:209	JaxKOMP-LAP	ECG	(none)	mean SR amplitude, mean amplitude of signal measured from signal minimum line to peak of QRS [mV] SR_amplitude mean_sr_amplitude 101185 IMPC_ECG_012_001	KOMP	48	both	69-75wks	N=7	2019

JaxKOMP-LAP:210	JaxKOMP-LAP	ECG	(none)	number of signals [n] n 101186 IMPC_ECG_001_001	KOMP	48	both	69-75wks	N=7	2019

JaxKOMP-LAP:211	JaxKOMP-LAP	ECG	(none)	duration of PQ interval [ms] PQ pq 101187 IMPC_ECG_005_001	KOMP	48	both	69-75wks	N=7	2019

JaxKOMP-LAP:212	JaxKOMP-LAP	ECG	(none)	duration of PR interval [ms] PR pr 101188 IMPC_ECG_006_001	KOMP	48	both	69-75wks	N=7	2019

JaxKOMP-LAP:213	JaxKOMP-LAP	ECG	(none)	duration of QRS interval [ms] QRS qrs 101189 IMPC_ECG_007_001	KOMP	48	both	69-75wks	N=7	2019

JaxKOMP-LAP:214	JaxKOMP-LAP	ECG	(none)	duration of QT interval [ms] QT qt 101190	KOMP	48	both	69-75wks	N=7	2019

JaxKOMP-LAP:215	JaxKOMP-LAP	ECG	(none)	duration of QTC interval, calculated by dividing QT interval by square root of preceding RR interval [ms] QTc qtc 101191 IMPC_ECG_009_001	KOMP	48	both	69-75wks	N=7	2019

JaxKOMP-LAP:216	JaxKOMP-LAP	ECG	(none)	QTc dispersion, calculated as rate-corrected QT dispersion [ms] QTc_dispersion qtc_dispersion 101192 IMPC_ECG_011_001	KOMP	48	both	69-75wks	N=7	2019

JaxKOMP-LAP:217	JaxKOMP-LAP	ECG	(none)	QT dispersion, measured as inter-lead variability of QT intervals [ms] QT_dispersion qt_dispersion 101193	KOMP	48	both	69-75wks	N=7	2019

JaxKOMP-LAP:218	JaxKOMP-LAP	ECG	(none)	root mean square of successive differences of neighboring RR intervals [ms] rMSSD rmssd 101194 IMPC_ECG_014_001	KOMP	48	both	69-75wks	N=7	2019

JaxKOMP-LAP:219	JaxKOMP-LAP	ECG	(none)	duration of RR interval [ms] RR rr 101195 IMPC_ECG_004_001	KOMP	48	both	69-75wks	N=7	2019

JaxKOMP-LAP:220	JaxKOMP-LAP	ECG	(none)	duration of ST interval [ms] ST st 101196 IMPC_ECG_008_001	KOMP	48	both	69-75wks	N=7	2019

JaxKOMP-LAP:221	JaxKOMP-LAP	ECG	(none)	proportion of number pairs of successive beat-to-beat intervals that exceed 50 ms [%] pNN50 pnn50_6ms 101197 IMPC_ECG_015_001	KOMP	38	both	69-75wks	N=7	2019

JaxKOMP-LAP:234	JaxKOMP-LAP	DXA	(none)	bone mineral content of whole body scan, head excluded [g] BMC bmc 101122 IMPC_DXA_005_001	KOMP	115	both	72-78wks	N=8	2021

JaxKOMP-LAP:235	JaxKOMP-LAP	DXA	(none)	bone mineral density of whole body scan, head excluded [g/cm²] BMD bmd 101123 IMPC_DXA_004_001	KOMP	115	both	72-78wks	N=8	2021

JaxKOMP-LAP:236	JaxKOMP-LAP	DXA	(none)	fat tissue mass of whole body scan, head excluded [g] fat fat_mass 101124 IMPC_DXA_002_001	KOMP	115	both	72-78wks	N=8	2021

JaxKOMP-LAP:243	JaxKOMP-LAP	DXA	(none)	fat tissue mass to body weight ratio [ratio] fat_adj fat_over_bw 101131 IMPC_DXA_009_001	KOMP	115	both	72-78wks	N=8	2021

JaxKOMP-LAP:245	JaxKOMP-LAP	DXA	(none)	bone area, whole body scan, head excluded [cm²] bone_area 101133 IMPC_DXA_010_001	KOMP	115	both	72-78wks	N=8	2021

JaxKOMP-LAP:246	JaxKOMP-LAP	DXA	(none)	bone mineral content to body weight ratio [ratio] BMC_adj bmc_over_bw 101134 IMPC_DXA_007_001	KOMP	115	both	72-78wks	N=8	2021

JaxKOMP-LAP:247	JaxKOMP-LAP	DXA	(none)	percent fat, whole body scan, head excluded [%] pct_fat 101135	KOMP	115	both	72-78wks	N=8	2021

JaxKOMP-LAP:268	JaxKOMP-LAP	ophthalmoscopy	(none)	optic disc optic_disc 101620 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:269	JaxKOMP-LAP	ophthalmoscopy	(none)	retinal blood vessels retinal_blood_vessels 101621 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:271	JaxKOMP-LAP	ophthalmoscopy	(none)	retinal blood vessels pattern retinal_blood_vessels_pattern 101623 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:272	JaxKOMP-LAP	ophthalmoscopy	(none)	retinal blood vessels structure retinal_blood_vessels_structure 101625 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:281	JaxKOMP-LAP	slit lamp	(none)	lacrimation lacrimation 101635 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:283	JaxKOMP-LAP	ABR test	(none)	auditory brainstem response (ABR) threshold, sound pressure level [dB] pip minimum_threshold 101501 6 kHz pip 12 kHz pip 18 kHz pip 24 kHz pip 30 kHz pip	KOMP		both	74-78wks	N=4	2017

JaxKOMP-LAP:311	JaxKOMP-LAP	complete blood count	(none)	white blood cell count (WBC; units per volume x 10³) [n/µL] WBC white_blood_cells_wbc 101281	KOMP	100	both	75-81wks	N=6	2021

JaxKOMP-LAP:312	JaxKOMP-LAP	complete blood count	(none)	red blood cell count (RBC; per volume x 10⁶) [n/µL] RBC red_blood_cells_rbc 101282	KOMP	100	both	75-81wks	N=6	2021

JaxKOMP-LAP:313	JaxKOMP-LAP	complete blood count	(none)	measured hemoglobin (mHGB) [g/dL] mHGB measured_hemoglobin_mhgb 101283	KOMP	98	both	75-81wks	N=6	2021

JaxKOMP-LAP:314	JaxKOMP-LAP	complete blood count	(none)	hematocrit (HCT) [%] HCT hematocrit_hct 101284	KOMP	99	both	75-81wks	N=6	2021

JaxKOMP-LAP:315	JaxKOMP-LAP	complete blood count	(none)	mean RBC corpuscular volume (MCV) [fL] MCV mean_cell_volume_mcv 101285	KOMP	100	both	75-81wks	N=6	2021

JaxKOMP-LAP:316	JaxKOMP-LAP	complete blood count	(none)	mean RBC corpuscular hemoglobin (MCH) [pg] MCH mean_cell_hemoglobin_mch 101286	KOMP	61	both	75-81wks	N=6	2021

JaxKOMP-LAP:317	JaxKOMP-LAP	complete blood count	(none)	mean RBC corpuscular hemoglobin concentration (MCHC) [g/dL] MCHC mean_cell_hemoglobin_concentration_mchc 101287	KOMP	100	both	75-81wks	N=6	2021

JaxKOMP-LAP:318	JaxKOMP-LAP	complete blood count	(none)	RBC corpuscular hemoglobin concentration mean (CHCM) [g/dL] CHCM red_cell_hem_con_mean_chcm 101288	KOMP	64	both	75-81wks	N=6	2021

JaxKOMP-LAP:319	JaxKOMP-LAP	complete blood count	(none)	RBC corpuscular distribution width (RDW) [%] RDW red_cell_distr_width_rdw 101289	KOMP	99	both	75-81wks	N=6	2021

JaxKOMP-LAP:320	JaxKOMP-LAP	complete blood count	(none)	hemoglobin concentration distribution width (HDW) [g/dL] HDW hemoglobin_concentration_distr_width_hdw 101290	KOMP	61	both	75-81wks	N=6	2021

JaxKOMP-LAP:321	JaxKOMP-LAP	complete blood count	(none)	platelet count (PLT; units per volume x 10³) [n/µL] PLT platelet_count_plt 101291	KOMP	100	both	75-81wks	N=6	2021

JaxKOMP-LAP:322	JaxKOMP-LAP	complete blood count	(none)	mean platelet volume (MPV) [fL] MPV mean_platelet_volume_mpv 101292	KOMP	100	both	75-81wks	N=6	2021

JaxKOMP-LAP:323	JaxKOMP-LAP	complete blood count	(none)	neutrophil differential (percent of total WBC) [%] pct_NEUT neutrophils_neut 101293	KOMP	100	both	75-81wks	N=6	2021

JaxKOMP-LAP:324	JaxKOMP-LAP	complete blood count	(none)	lymphocyte differential (percent of total WBC) [%] pct_LYM lymphocytes_lym 101294	KOMP	100	both	75-81wks	N=6	2021

JaxKOMP-LAP:325	JaxKOMP-LAP	complete blood count	(none)	monocyte differential (percent of total WBC) [%] pct_MONO monocytes_mono 101295	KOMP	102	both	75-81wks	N=6	2021

JaxKOMP-LAP:326	JaxKOMP-LAP	complete blood count	(none)	eosinophil differential (percent of total WBC) [%] pct_EOS eosinophils_eos 101296	KOMP	101	both	75-81wks	N=6	2021

JaxKOMP-LAP:327	JaxKOMP-LAP	complete blood count	(none)	large unstained cells (percent of total WBC) [%] pct_LUC pct_large_unstained_cells_luc 101297	KOMP	62	both	75-81wks	N=6	2021

JaxKOMP-LAP:328	JaxKOMP-LAP	complete blood count	(none)	basophil differential (percent of total WBC) [%] pct_BASO basophils_baso 101298	KOMP	99	both	75-81wks	N=6	2021

JaxKOMP-LAP:329	JaxKOMP-LAP	complete blood count	(none)	reticulocyte count (Retic; units per volume x 10⁹) [n/µL] Retic reticulocytes_retic 101299	KOMP	100	both	75-81wks	N=6	2021

JaxKOMP-LAP:330	JaxKOMP-LAP	complete blood count	(none)	calculated hemoglobin (cHGB) [g/dL] cHGB calculated_hemoglobin_chgb 101300	KOMP	62	both	75-81wks	N=6	2021

JaxKOMP-LAP:331	JaxKOMP-LAP	complete blood count	(none)	mean corpuscular hemoglobin (CHr) [pg] CHr mean_corpuscular_hemoglobin_chg 101301	KOMP	99	both	75-81wks	N=6	2021

JaxKOMP-LAP:332	JaxKOMP-LAP	complete blood count	(none)	reticulocyte differential (percent of total RBC) [%] pct_Retic percent_retic 101302	KOMP	102	both	75-81wks	N=6	2021

JaxKOMP-LAP:334	JaxKOMP-LAP	organ weights	(none)	heart weight [mg] heart_wt heart_weight 101583 weight normalized to body weight	KOMP	115	both	75-81wks	N=8	2021

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