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Examples
Phenotype measures directly associated with
ontology
term
VT:0010139 'immune response trait'
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This list only includes measures mapped to VT:0010139 directly. Measures mapped to its
ontology descendants
are not included. Alternatively, you can show measures mapped to
VT:0010139 AND its descendants
.
VT:0010435 response to bacterial infection trait
VT:0010436 response to fungal infection trait
VT:0010437 response to parasitic infection trait
VT:0010439 response to viral infection trait
VT:0010440 bacteria quantity
VT:0010441 parasite quantity
VT:0010997 response to Coronaviridae infection
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Data set
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Farmer1
(21)
Leiter2
(5)
Mahler1
(6)
Mathews1
(3)
Mrug1
(1)
Reifsnyder2
(4)
Sundberg2
(1)
Procedure / Protocol
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health assessment
(2)
histopathology
(39)
Treatment
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(none)
(41)
Panel
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QTL population
(41)
Sex
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both
(29)
f
(12)
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Data set
Procedure / Protocol
Treatment
Phenotype Measure / Variable (click to view)
Panel
No. of Strains
Sex
Age
Sample Size (Avg)
Year
Farmer1:1
Farmer1
histopathology
(none)
severity of lesions in cecum [score]
CecumSeverity
11301
QTL population
both
6wks
N=206
2001
Farmer1:2
Farmer1
histopathology
(none)
hyperplasia of cecum [score]
CecumHyperplasia
11302
QTL population
both
6wks
N=206
2001
Farmer1:3
Farmer1
histopathology
(none)
ulceration in cecum [score]
CecumUlceration
11303
QTL population
both
6wks
N=206
2001
Farmer1:4
Farmer1
histopathology
(none)
percentage of cecum damaged area [%]
CecumDA
11304
QTL population
both
6wks
N=206
2001
Farmer1:5
Farmer1
histopathology
(none)
sum of cecum severity, hyperplasia, ulceration and damaged area scores [score]
CecumTotalScore
11305
QTL population
both
6wks
N=206
2001
Farmer1:6
Farmer1
histopathology
(none)
percentage of proximal colon damaged area [%]
ProxDA
11306
QTL population
both
6wks
N=206
2001
Farmer1:7
Farmer1
histopathology
(none)
severity of lesions in proximal colon [score]
ProxSeverity
11307
QTL population
both
6wks
N=206
2001
Farmer1:8
Farmer1
histopathology
(none)
hyperplasia of proximal colon [score]
ProxHyperplasia
11308
QTL population
both
6wks
N=206
2001
Farmer1:9
Farmer1
histopathology
(none)
ulceration in proximal colon [score]
ProxUlceration
11309
QTL population
both
6wks
N=206
2001
Farmer1:10
Farmer1
histopathology
(none)
percentage of damaged area in mid colon [%]
MidDA
11310
QTL population
both
6wks
N=206
2001
Farmer1:11
Farmer1
histopathology
(none)
severity of lesions in mid colon [score]
MidSeverity
11311
QTL population
both
6wks
N=206
2001
Farmer1:12
Farmer1
histopathology
(none)
hyperplasia of mid colon [score]
MidHyperplasia
11312
QTL population
both
6wks
N=206
2001
Farmer1:13
Farmer1
histopathology
(none)
ulcers and crypts frequency score [score]
MidUlceration
11313
QTL population
both
6wks
N=206
2001
Farmer1:14
Farmer1
histopathology
(none)
percentage of damaged area in distal colon [%]
DistalDA
11314
QTL population
both
6wks
N=206
2001
Farmer1:15
Farmer1
histopathology
(none)
severity of lesions in distal colon [score]
DistalSeverity
11315
QTL population
both
6wks
N=206
2001
Farmer1:16
Farmer1
histopathology
(none)
hyperplasia of distal colon [score]
DistalHyperplasia
11316
QTL population
both
6wks
N=206
2001
Farmer1:17
Farmer1
histopathology
(none)
ulceration in distal colon [score]
DistalUlceration
11317
QTL population
both
6wks
N=206
2001
Farmer1:18
Farmer1
histopathology
(none)
proximal colon score [score]
ProximalColon
11318
QTL population
both
6wks
N=206
2001
Farmer1:19
Farmer1
histopathology
(none)
middle colon score [score]
MiddleColon
11319
QTL population
both
6wks
N=206
2001
Farmer1:20
Farmer1
histopathology
(none)
distal colon score [score]
DistalColon
11320
QTL population
both
6wks
N=206
2001
Farmer1:21
Farmer1
histopathology
(none)
total score [score]
ColonTotalScore
11321
QTL population
both
6wks
N=206
2001
Leiter2:1
Leiter2
health assessment
(none)
age of diabetes onset (dash = no diabetes) [wks]
Onset
24001
QTL population
f
14-40wks
N=310
2009
Leiter2:2
Leiter2
health assessment
(none)
1 = diabetes, 0 = no diabetes [score]
DB1_0
24002
QTL population
f
14-40wks
N=310
2009
Leiter2:3
Leiter2
histopathology
(none)
combination score of age at type 1 diabetes onset, and insulitis severity / extent (see excel file) [score]
Insulities_TimeOnset
24003
QTL population
f
14-40wks
N=310
2009
Leiter2:4
Leiter2
histopathology
(none)
insulitis severity / extent score (0-4, see excel file) [score]
Insulitis
24004
QTL population
f
14-40wks
N=310
2009
Leiter2:5
Leiter2
histopathology
(none)
group mice by insulitis score (0-3, see excel file) [score]
GroupInsulitis_Diabetes
24005
QTL population
f
14-40wks
N=310
2009
Mahler1:2
Mahler1
histopathology
(none)
cecum assessment, first Principal Component
CecumPC1
12102
QTL population
both
6wks
N=102
2002
Mahler1:3
Mahler1
histopathology
(none)
proximal colon assessment, first Principal Component
ProxPC1
12103
QTL population
both
6wks
N=102
2002
Mahler1:4
Mahler1
histopathology
(none)
middle colon assessment, first Principal Component
MidPC1
12104
QTL population
both
6wks
N=102
2002
Mahler1:5
Mahler1
histopathology
(none)
distal colon assessment, first Principal Component
DistPC1
12105
QTL population
both
6wks
N=102
2002
Mahler1:6
Mahler1
histopathology
(none)
ulceration (score 0-4, increasing severity), first Principal Component
Ulceration-PC1
12106
QTL population
both
6wks
N=102
2002
Mahler1:7
Mahler1
histopathology
(none)
ulceration (score 0-4, increasing severity), second Principal Component
Ulceration-PC2
12107
QTL population
both
6wks
N=102
2002
Mathews1:1
Mathews1
histopathology
(none)
Clinical T1DM accompanied by end-stage insulitis before necropsy (score 0=non-diabetes, 1=diabetes) [score]
IDDM
13401
QTL population
f
8-40wks
N=120
2003
Mathews1:2
Mathews1
histopathology
(none)
severity of diabetes (score 0=non-diabetes, 1=diabetes, 2=severe diabetes) [score]
IDDM_VS_HI
13402
QTL population
f
8-40wks
N=120
2003
Mathews1:3
Mathews1
histopathology
(none)
Clinical T1DM accompanied by end-stage insulitis diagnosed at necropsy (score 0=non-diabetes, 1=diabetes) [score]
IDM
13403
QTL population
f
8-40wks
N=120
2003
Mrug1:3
Mrug1
histopathology
(none)
cholangitis severity (score 0-4, increasing severity) 0 = no/minimal inflammation, 4=severe and extensive cholangiohepatitis [score]
Cholangitis
17503
QTL population
both
10d
N=230
2005
Reifsnyder2:1
Reifsnyder2
histopathology
(none)
the week of clinical diabetes onset [n]
Onset
17601
QTL population
f
12-40wks
N=185
2005
Reifsnyder2:2
Reifsnyder2
histopathology
(none)
insulitis score of diabetes-free mice, (from 0.002=virtually no insulitis, to 1.0=incipient diabetic)
Insulitis_Index
17602
QTL population
f
12-40wks
N=185
2005
Reifsnyder2:3
Reifsnyder2
histopathology
(none)
first principal component of age at diabetes onset and severity/extent of insulitis
Prin1
17603
QTL population
f
12-40wks
N=185
2005
Reifsnyder2:4
Reifsnyder2
histopathology
(none)
second principal component of age at diabetes onset and severity / extent of insulitis
Prin2
17604
QTL population
f
12-40wks
N=185
2005
Sundberg2:1
Sundberg2
histopathology
(none)
Alopecia areata diagnosis (score 0=no alopecia, 1=alopecia) [score]
alopecia_score
13501
QTL population
both
52wks
N=184
2003
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