Studies from Center for Genome Dynamics (CGD)

More information about this center is at their web site.


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Data set Procedure What's in this data set Strains
Tested
Sex Age Year
CGD-MDA1 genotyping SNP profiling, 470,000+ genomic locations, 1-19,X,Y,MT. None SNPs inbred  (142) m 2014
CGD-MDA2 genotyping SNP profiling, 470,000+ genomic locations, 1-19,X,Y,MT. None SNPs BXD  (92) w/progenitors m 2014
CGD-MDA3 genotyping SNP profiling, 470,000+ genomic locations, 1-19,X,Y,MT. None SNPs ILSXISS  (69) w/progenitors m 2014
CGD-MDA4 genotyping SNP profiling, 470,000+ genomic locations, 1-19,X,Y,MT. None SNPs AXB, BXA, BXH, CXB, AKXL  (72) w/progenitors m 2014
CGD-MDA5 genotyping SNP profiling, 470,000+ genomic locations, 1-19,X,Y,MT. None SNPs B6.A, B6.PWD consomic panels  (53) m 2014
CGDpheno1 body size and weight Body weight and length. None BW inbred  (72) both 10-13wks 2009
CGDpheno1 complete blood count Hematology. Cell counts, white cells, lymphocytes, neutrophils, monocytes, eosinophils, red cell parameters, hemoglobin, hematocrit, reticulocytes, platelets CBC, RBC, WBC, CHCM, EOS, HCT, HGB, LYM, MCH, MCHC, MONO, MPV, NEUT, PLT, RET, RETIC inbred  (72) both 10-13wks 2009
CGDpheno1 DXA Body mass, fat mass, lean mass, bone mineral density. None BMD inbred  (72) both 10-13wks 2009
CGDpheno1 lipid profile Cholesterol, HDL, triglycerides, free fatty acids. 4h fast, plasma. None CHOL, FFA, TG inbred  (72) both 10-13wks 2009
CGDpheno1 metabolic panel Clinical blood chemistry (plasma). 4h fast. glucose, bilirubin, urea nitrogen, thyroxine, chloride, potassium, sodium, dissolved carbon dioxide BIL, CO2, GLU, T4, TBIL, chem inbred  (72) both 10-13wks 2009
CGDpheno2 body size and weight Body weight and length, variation over time of controls. None BW one strain both 2009
CGDpheno2 complete blood count Hematology. Variation over time of controls. cell counts, white cells, lymphocytes, neutrophils, monocytes, eosinophils, red cell parameters, hemoglobin, hematocrit, reticulocytes, platelets CBC, RBC, WBC, CHCM, EOS, HCT, HGB, LYM, MCH, MCHC, MONO, MPV, NEUT, PLT, RET, RETIC one strain both 2009
CGDpheno2 DXA Body mass, fat mass, lean mass, bone mineral density. Variation over time of controls. None BMD one strain both 2009
CGDpheno2 lipid profile Cholesterol, HDL, triglycerides, free fatty acids. 4h fast, plasma. Variation over time of controls. None CHOL, FFA, TG one strain both 2009
CGDpheno2 metabolic panel Clinical blood chemistry (plasma), variation over time of controls. 4h fast. glucose, bilirubin, urea nitrogen, thyroxine, chloride, potassium, sodium, dissolved carbon dioxide BIL, CO2, GLU, T4, TBIL, chem one strain both 2009
CGDpheno3 body weight Body weight None BW CC diallel  (62) w/progenitors both 8-16wks 2012
CGDpheno3 complete blood count Hematology. cell counts, white cells, lymphocytes, neutrophils, monocytes, basophils, eosinophils, large unstained cells, red cell parameters, hemoglobin, hematocrit, reticulocytes, platelets BASO, CBC, RBC, WBC, CHCM, EOS, HCT, HGB, LUC, LYM, MCH, MCHC, MONO, MPV, NEUT, PLT, RET, RETIC CC diallel  (62) w/progenitors both 8-16wks 2012
CGDpheno3 DXA Body mass, fat mass, lean mass, bone mineral density and content, bone area. None BMD CC diallel  (62) w/progenitors both 8-16wks 2012
CGDpheno3 ECG Wave amplitudes and intervals. Conscious. None ECG, EKG CC diallel  (62) w/progenitors both 8-16wks 2012
CGDpheno3 lipid profile Cholesterol, HDL, triglycerides. 4h fast, plasma. None CHOL, TG CC diallel  (62) w/progenitors both 8-16wks 2012
CGDpheno3 metabolic panel Glucose (plasma). 4h fast. None GLU CC diallel  (62) w/progenitors both 8-16wks 2012
CGDpheno3 tail cuff Heart rate and blood pressure. Conscious mice. None BP, HR CC diallel  (62) w/progenitors both 8-16wks 2012
Churchill1 DXA Body mass, fat mass, lean mass, bone mineral density and content, bone area. whole body without head, skull, spine BMD F1 8way  (63) both 7-8wks 2004
Churchill1 muscle weights Quadriceps muscle. None None F1 8way  (63) both 7-8wks 2004
Churchill1 organ dimensions Ear length (pinal). None None F1 8way  (63) both 7-8wks 2004
Shockley1 body weight
with high-fat diet
High-fat diet for 4wks vs. control. None BW inbred  (10) both 10-13wks 2008
Shockley1 lipid profile
with high-fat diet
Cholesterol, HDL, triglycerides, fatty acids. High-fat diet (4wks) vs. control. 5h fast, serum. cholesterol, HDL, triglycerides, nonesterified fatty acids CHOL, FFA, NEFA, TG inbred  (10) both 10-13wks 2008
Shockley1 metabolic panel
with high-fat diet
Clinical blood chemistry measures (serum). High-fat diet (4wks) vs. control. glucose, urea nitrogen, thyroxine, calcium, glutamate dehydrogenase GLDH, GLU, T4, chem inbred  (10) both 10-13wks 2008
UNC-MMUGA2 genotyping SNP profiling, 76,000+ genomic locations, 1-19,X,MT None SNPs CC  (77) w/progenitors both 2017