MPD: Phenotype measures mapped to MA:0000333, large intestine

Phenotype measures associated with ontology term
MA:0000333 'large intestine'

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All measures in this list are mapped to the ontology descendants of MA:0000333. None are mapped to MA:0000333 directly.

MA:0000334 cecum
MA:0000335 colon

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Auwerx2:123	Auwerx2	organ weights	(none)	cecum weight [g] cecum_wt 114651 CD HFD	inbred w/CC8	9	both	21wks	N=4	2021

Farmer1:1	Farmer1	histopathology	(none)	severity of lesions in cecum [score] CecumSeverity 11301	QTL population		both	6wks	N=206	2001

Farmer1:2	Farmer1	histopathology	(none)	hyperplasia of cecum [score] CecumHyperplasia 11302	QTL population		both	6wks	N=206	2001

Farmer1:3	Farmer1	histopathology	(none)	ulceration in cecum [score] CecumUlceration 11303	QTL population		both	6wks	N=206	2001

Farmer1:4	Farmer1	histopathology	(none)	percentage of cecum damaged area [%] CecumDA 11304	QTL population		both	6wks	N=206	2001

Farmer1:5	Farmer1	histopathology	(none)	sum of cecum severity, hyperplasia, ulceration and damaged area scores [score] CecumTotalScore 11305	QTL population		both	6wks	N=206	2001

Farmer1:6	Farmer1	histopathology	(none)	percentage of proximal colon damaged area [%] ProxDA 11306	QTL population		both	6wks	N=206	2001

Farmer1:7	Farmer1	histopathology	(none)	severity of lesions in proximal colon [score] ProxSeverity 11307	QTL population		both	6wks	N=206	2001

Farmer1:8	Farmer1	histopathology	(none)	hyperplasia of proximal colon [score] ProxHyperplasia 11308	QTL population		both	6wks	N=206	2001

Farmer1:9	Farmer1	histopathology	(none)	ulceration in proximal colon [score] ProxUlceration 11309	QTL population		both	6wks	N=206	2001

Farmer1:10	Farmer1	histopathology	(none)	percentage of damaged area in mid colon [%] MidDA 11310	QTL population		both	6wks	N=206	2001

Farmer1:11	Farmer1	histopathology	(none)	severity of lesions in mid colon [score] MidSeverity 11311	QTL population		both	6wks	N=206	2001

Farmer1:12	Farmer1	histopathology	(none)	hyperplasia of mid colon [score] MidHyperplasia 11312	QTL population		both	6wks	N=206	2001

Farmer1:13	Farmer1	histopathology	(none)	ulcers and crypts frequency score [score] MidUlceration 11313	QTL population		both	6wks	N=206	2001

Farmer1:14	Farmer1	histopathology	(none)	percentage of damaged area in distal colon [%] DistalDA 11314	QTL population		both	6wks	N=206	2001

Farmer1:15	Farmer1	histopathology	(none)	severity of lesions in distal colon [score] DistalSeverity 11315	QTL population		both	6wks	N=206	2001

Farmer1:16	Farmer1	histopathology	(none)	hyperplasia of distal colon [score] DistalHyperplasia 11316	QTL population		both	6wks	N=206	2001

Farmer1:17	Farmer1	histopathology	(none)	ulceration in distal colon [score] DistalUlceration 11317	QTL population		both	6wks	N=206	2001

Farmer1:18	Farmer1	histopathology	(none)	proximal colon score [score] ProximalColon 11318	QTL population		both	6wks	N=206	2001

Farmer1:19	Farmer1	histopathology	(none)	middle colon score [score] MiddleColon 11319	QTL population		both	6wks	N=206	2001

Farmer1:20	Farmer1	histopathology	(none)	distal colon score [score] DistalColon 11320	QTL population		both	6wks	N=206	2001

Farmer1:21	Farmer1	histopathology	(none)	total score [score] ColonTotalScore 11321	QTL population		both	6wks	N=206	2001

Mahler1:2	Mahler1	histopathology	(none)	cecum assessment, first Principal Component CecumPC1 12102	QTL population		both	6wks	N=102	2002

Mahler1:3	Mahler1	histopathology	(none)	proximal colon assessment, first Principal Component ProxPC1 12103	QTL population		both	6wks	N=102	2002

Mahler1:4	Mahler1	histopathology	(none)	middle colon assessment, first Principal Component MidPC1 12104	QTL population		both	6wks	N=102	2002

Mahler1:5	Mahler1	histopathology	(none)	distal colon assessment, first Principal Component DistPC1 12105	QTL population		both	6wks	N=102	2002

Mahler1:6	Mahler1	histopathology	(none)	ulceration (score 0-4, increasing severity), first Principal Component Ulceration-PC1 12106	QTL population		both	6wks	N=102	2002

Mahler1:7	Mahler1	histopathology	(none)	ulceration (score 0-4, increasing severity), second Principal Component Ulceration-PC2 12107	QTL population		both	6wks	N=102	2002

Schoonjans1:234	Schoonjans1	organ weights	high-fat diet	cecum weight [g] cecum_wt 112869 CD HFD	BXD w/par	36	m	29wks	N=5	2021

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