Project measure / variable:   Rusyn5   liver_homocysteine_hf

ID, description, units MPD:43031   liver_homocysteine_hf   liver homocysteine   [nmol/mg]  high-fat only  
high-fat diet and ethanol study
Data set, strains Rusyn5   inbred   14 strains     sex: m     age: 8-14wks
Procedure metabolite quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rusyn5 - liver homocysteine high-fat only



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested14 strains
Mean of the strain means0.214   nmol/mg
Median of the strain means0.218   nmol/mg
SD of the strain means± 0.0278
Coefficient of variation (CV)0.130
Min–max range of strain means0.160   –   0.250   nmol/mg
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 13 0.0302 0.0023 1.7947 0.0949
Residuals 28 0.0362 0.0013


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.197 0.0379   3 0.0219 0.193 0.17, 0.24 -0.6
AKR/J m 0.233 0.0404   3 0.0233 0.173 0.19, 0.27 0.7
BALB/cByJ m 0.247 0.0252   3 0.0145 0.102 0.22, 0.27 1.2
BALB/cJ m 0.18 0.01   3 0.00577 0.0556 0.17, 0.19 -1.21
BTBR T+ Itpr3tf/J m 0.22 0.0458   3 0.0265 0.208 0.18, 0.27 0.23
C3H/HeJ m 0.233 0.0611   3 0.0353 0.262 0.18, 0.3 0.7
C57BL/10J m 0.213 0.0252   3 0.0145 0.118 0.19, 0.24 -0.02
DBA/2J m 0.227 0.0115   3 0.00667 0.0509 0.22, 0.24 0.48
FVB/NJ m 0.217 0.0306   3 0.0176 0.141 0.19, 0.25 0.12
KK/HlJ m 0.24 0.0436   3 0.0252 0.182 0.19, 0.27 0.95
MOLF/EiJ m 0.25 0.0265   3 0.0153 0.106 0.22, 0.27 1.31
NZW/LacJ m 0.16 0.0173   3 0.01 0.108 0.15, 0.18 -1.93
PWD/PhJ m 0.197 0.0473   3 0.0273 0.24 0.16, 0.25 -0.6
WSB/EiJ m 0.177 0.0404   3 0.0233 0.229 0.14, 0.22 -1.32


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.1967 0.0208 0.2392 0.1541
AKR/J m 0.2333 0.0208 0.2759 0.1908
BALB/cByJ m 0.2467 0.0208 0.2892 0.2041
BALB/cJ m 0.18 0.0208 0.2225 0.1375
BTBR T+ Itpr3tf/J m 0.22 0.0208 0.2625 0.1775
C3H/HeJ m 0.2333 0.0208 0.2759 0.1908
C57BL/10J m 0.2133 0.0208 0.2559 0.1708
DBA/2J m 0.2267 0.0208 0.2692 0.1841
FVB/NJ m 0.2167 0.0208 0.2592 0.1741
KK/HlJ m 0.24 0.0208 0.2825 0.1975
MOLF/EiJ m 0.25 0.0208 0.2925 0.2075
NZW/LacJ m 0.16 0.0208 0.2025 0.1175
PWD/PhJ m 0.1967 0.0208 0.2392 0.1541
WSB/EiJ m 0.1767 0.0208 0.2192 0.1341




  GWAS USING LINEAR MIXED MODELS