Project measure / variable:   Yuan3   Mg_M06

ID, description, units MPD:24431   Mg_M06   magnesium (serum Mg)   [mg/dL]  at age 6mo  
Data set, strains Yuan3   inbred   30 strains     sex: both     age: 26wks
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  STRAIN COMPARISON PLOT
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Yuan3 - magnesium (serum Mg) at age 6mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains25 strains
Mean of the strain means2.71   mg/dL 2.61   mg/dL
Median of the strain means2.70   mg/dL 2.63   mg/dL
SD of the strain means± 0.377 ± 0.326
Coefficient of variation (CV)0.139 0.125
Min–max range of strain means1.88   –   3.40   mg/dL 2.10   –   3.07   mg/dL
Mean sample size per strain6.7   mice 6.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.5489 1.5489 30.0539 < 0.0001
strain 20 18.0542 0.9027 17.5153 < 0.0001
sex:strain 20 11.1748 0.5587 10.8413 < 0.0001
Residuals 253 13.0392 0.0515


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.1 0.424   2   0.3 0.137 2.8, 3.4 1.03
129S1/SvImJ m 2.63 0.151   6 0.0615 0.0572 2.4, 2.8 0.05
A/J f 2.51 0.177   16 0.0442 0.0706 2.3, 2.9 -0.54
A/J m 2.41 0.236   8 0.0833 0.0977 2.0, 2.8 -0.62
BALB/cByJ f 3.05 0.177   8 0.0627 0.0581 2.7, 3.3 0.9
BALB/cByJ m 2.43 0.238   8 0.084 0.098 2.1, 2.9 -0.56
BTBR T+ Itpr3tf/J f 2.7 0.141   4 0.0707 0.0524 2.6, 2.9 -0.03
BTBR T+ Itpr3tf/J m 2.45 0.288   8 0.102 0.117 2.1, 2.8 -0.5
BUB/BnJ f 3.1 0.245   4 0.122 0.079 2.8, 3.4 1.03
BUB/BnJ m 3.07 0.288   6 0.117 0.0938 2.6, 3.3 1.4
C3H/HeJ f 2.21 0.0991   8 0.035 0.0448 2.1, 2.4 -1.33
C3H/HeJ m 2.1 0.1   3 0.0577 0.0476 2.0, 2.2 -1.58
C57BL/10J f 3.4 0.29   6 0.118 0.0852 3.0, 3.8 1.83
C57BL/10J m 3.0 0.167   6 0.0683 0.0558 2.8, 3.2 1.19
C57BL/6J f 2.83 0.15   7 0.0565 0.0529 2.6, 3.0 0.31
C57BL/6J m 2.9 0.2   3 0.115 0.069 2.7, 3.1 0.88
C57BLKS/J f 2.83 0.151   6 0.0615 0.0531 2.7, 3.1 0.31
C57BLKS/J m 2.37 0.138   7 0.0522 0.0582 2.1, 2.5 -0.75
C57BR/cdJ m 3.03 0.231   3 0.133 0.0761 2.9, 3.3 1.28
C57L/J f 2.49 0.121   7 0.0459 0.0489 2.3, 2.6 -0.59
C57L/J m 2.83 0.128   8 0.0453 0.0454 2.7, 3.1 0.67
CAST/EiJ f 1.88 0.0957   4 0.0479 0.0511 1.8, 2.0 -2.21
CBA/J f 2.27 0.216   6 0.0882 0.0953 2.0, 2.6 -1.17
DBA/2J f 3.0 0.1   7 0.0378 0.0333 2.8, 3.1 0.76
DBA/2J m 2.51 0.328   16 0.0821 0.131 2.1, 3.2 -0.32
FVB/NJ f 2.69 0.273   14 0.073 0.101 2.2, 3.2 -0.06
FVB/NJ m 2.96 0.256   8 0.0905 0.0864 2.6, 3.4 1.07
KK/HlJ f 2.61 0.135   7 0.0508 0.0515 2.4, 2.8 -0.27
LP/J f 2.79 0.247   8 0.0875 0.0888 2.5, 3.2 0.21
LP/J m 2.95 0.226   6 0.0922 0.0766 2.7, 3.3 1.04
MOLF/EiJ f 2.31 0.135   7 0.0508 0.0581 2.1, 2.5 -1.07
MOLF/EiJ m 2.31 0.121   7 0.0459 0.0525 2.2, 2.5 -0.93
MRL/MpJ m 2.82 0.147   6 0.0601 0.0523 2.6, 3.0 0.64
NOD.B10Sn-H2b/J f 2.16 0.169   8 0.0596 0.0779 2.0, 2.5 -1.46
NOD.B10Sn-H2b/J m 2.17 0.0957   4 0.0479 0.044 2.1, 2.3 -1.36
NON/ShiLtJ f 2.67 0.16   7 0.0606 0.06 2.4, 2.9 -0.11
NON/ShiLtJ m 2.99 0.356   8 0.126 0.119 2.3, 3.3 1.16
NZO/HlLtJ f 3.1 0.0   1   0.0 0.0 3.1, 3.1 1.03
NZO/HlLtJ m 3.0 0.42   6 0.171 0.14 2.3, 3.4 1.19
NZW/LacJ f 2.52 0.139   8 0.0491 0.055 2.4, 2.8 -0.51
P/J f 3.23 0.501   8 0.177 0.155 2.5, 3.9 1.37
P/J m 2.26 0.2   8 0.0706 0.0882 2.0, 2.6 -1.08
PL/J f 2.99 0.408   9 0.136 0.136 2.6, 3.8 0.74
PL/J m 2.7 0.0   1   0.0 0.0 2.7, 2.7 0.27
PWD/PhJ f 2.4 0.169   8 0.0598 0.0704 2.2, 2.7 -0.83
PWD/PhJ m 2.71 0.227   7 0.0857 0.0836 2.4, 3.0 0.3
RIIIS/J f 3.35 0.173   4 0.0866 0.0517 3.1, 3.5 1.69
RIIIS/J m 2.38 0.271   8 0.0959 0.114 2.0, 2.8 -0.72
SJL/J f 2.59 0.173   8 0.0611 0.0667 2.3, 2.9 -0.32
SM/J f 2.7 0.16   8 0.0567 0.0594 2.5, 3.0 -0.03
SM/J m 2.14 0.151   7 0.0571 0.0706 2.0, 2.3 -1.45
WSB/EiJ f 2.45 0.0707   2   0.05 0.0289 2.4, 2.5 -0.69
WSB/EiJ m 2.2 0.0816   4 0.0408 0.0371 2.1, 2.3 -1.27


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.1 0.1605 3.4161 2.7839
129S1/SvImJ m 2.6333 0.0927 2.8159 2.4508
A/J f 2.5063 0.0568 2.618 2.3945
A/J m 2.4125 0.0803 2.5706 2.2544
BALB/cByJ f 3.05 0.0803 3.2081 2.8919
BALB/cByJ m 2.425 0.0803 2.5831 2.2669
BTBR T+ Itpr3tf/J f 2.7 0.1135 2.9235 2.4765
BTBR T+ Itpr3tf/J m 2.45 0.0803 2.6081 2.2919
BUB/BnJ f 3.1 0.1135 3.3235 2.8765
BUB/BnJ m 3.0667 0.0927 3.2492 2.8841
C3H/HeJ f 2.2125 0.0803 2.3706 2.0544
C3H/HeJ m 2.1 0.1311 2.3581 1.8419
C57BL/10J f 3.4 0.0927 3.5825 3.2175
C57BL/10J m 3.0 0.0927 3.1825 2.8175
C57BL/6J f 2.8286 0.0858 2.9976 2.6596
C57BL/6J m 2.9 0.1311 3.1581 2.6419
C57BLKS/J f 2.8333 0.0927 3.0159 2.6508
C57BLKS/J m 2.3714 0.0858 2.5404 2.2024
C57L/J f 2.4857 0.0858 2.6547 2.3167
C57L/J m 2.825 0.0803 2.9831 2.6669
DBA/2J f 3.0 0.0858 3.169 2.831
DBA/2J m 2.5125 0.0568 2.6243 2.4007
FVB/NJ f 2.6929 0.0607 2.8123 2.5734
FVB/NJ m 2.9625 0.0803 3.1206 2.8044
LP/J f 2.7875 0.0803 2.9456 2.6294
LP/J m 2.95 0.0927 3.1325 2.7675
MOLF/EiJ f 2.3143 0.0858 2.4833 2.1453
MOLF/EiJ m 2.3143 0.0858 2.4833 2.1453
NOD.B10Sn-H2b/J f 2.1625 0.0803 2.3206 2.0044
NOD.B10Sn-H2b/J m 2.175 0.1135 2.3985 1.9515
NON/ShiLtJ f 2.6714 0.0858 2.8404 2.5024
NON/ShiLtJ m 2.9875 0.0803 3.1456 2.8294
P/J f 3.225 0.0803 3.3831 3.0669
P/J m 2.2625 0.0803 2.4206 2.1044
PWD/PhJ f 2.4 0.0803 2.5581 2.2419
PWD/PhJ m 2.7143 0.0858 2.8833 2.5453
RIIIS/J f 3.35 0.1135 3.5735 3.1265
RIIIS/J m 2.375 0.0803 2.5331 2.2169
SM/J f 2.7 0.0803 2.8581 2.5419
SM/J m 2.1429 0.0858 2.3118 1.9739
WSB/EiJ f 2.45 0.1605 2.7661 2.1339
WSB/EiJ m 2.2 0.1135 2.4235 1.9765


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.8667 0.0927 3.0492 2.6841
A/J both 2.4594 0.0492 2.5562 2.3626
BALB/cByJ both 2.7375 0.0568 2.8493 2.6257
BTBR T+ Itpr3tf/J both 2.575 0.0695 2.7119 2.4381
BUB/BnJ both 3.0833 0.0733 3.2276 2.939
C3H/HeJ both 2.1563 0.0768 2.3076 2.0049
C57BL/10J both 3.2 0.0655 3.3291 3.0709
C57BL/6J both 2.8643 0.0783 3.0185 2.71
C57BLKS/J both 2.6024 0.0632 2.7268 2.478
C57L/J both 2.6554 0.0587 2.7711 2.5397
DBA/2J both 2.7563 0.0514 2.8576 2.6549
FVB/NJ both 2.8277 0.0503 2.9268 2.7286
LP/J both 2.8688 0.0613 2.9895 2.748
MOLF/EiJ both 2.3143 0.0607 2.4338 2.1948
NOD.B10Sn-H2b/J both 2.1688 0.0695 2.3056 2.0319
NON/ShiLtJ both 2.8295 0.0587 2.9452 2.7138
P/J both 2.7438 0.0568 2.8555 2.632
PWD/PhJ both 2.5571 0.0587 2.6728 2.4414
RIIIS/J both 2.8625 0.0695 2.9994 2.7256
SM/J both 2.4214 0.0587 2.5371 2.3057
WSB/EiJ both 2.325 0.0983 2.5186 2.1314




  GWAS USING LINEAR MIXED MODELS