MPD: Phenotype measures mapped to VT:0100003, organism subdivision trait

Phenotype measures in JaxKOMP-LAP associated with ontology term
VT:0100003 'organism subdivision trait'

All measures in this list are mapped to the ontology descendants of VT:0100003. None are mapped to VT:0100003 directly.

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
JaxKOMP-LAP:36	JaxKOMP-LAP	observation (SHIRPA)	(none)	tail length tail_length 101341 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:37	JaxKOMP-LAP	observation (SHIRPA)	(none)	tail thickness tail_thickness 101342 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:38	JaxKOMP-LAP	observation (SHIRPA)	(none)	tail morphology tail_morphology 101343 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:39	JaxKOMP-LAP	observation (SHIRPA)	(none)	tail curvature tail_curvature 101344 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:40	JaxKOMP-LAP	observation (SHIRPA)	(none)	tail shape tail_shape 101345 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:54	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimbs position forelimbs_position 101359 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:55	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimbs size forelimbs_size 101360 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:56	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb footpads forelimb_footpads 101361 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:57	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimbs position hindlimbs_position 101362 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:58	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimbs shape hindlimbs_shape 101363 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:59	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimbs footpads hindlimbs_footpad 101364 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:60	JaxKOMP-LAP	observation (SHIRPA)	(none)	vibrissae presence vibrissae_presence 101365 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:61	JaxKOMP-LAP	observation (SHIRPA)	(none)	vibrissae appearance vibrissae_appearance 101366 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:62	JaxKOMP-LAP	observation (SHIRPA)	(none)	head size head_size 101367 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:63	JaxKOMP-LAP	observation (SHIRPA)	(none)	head morphology head_morphology 101368 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:64	JaxKOMP-LAP	observation (SHIRPA)	(none)	eye morphology eyes 101369 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:65	JaxKOMP-LAP	observation (SHIRPA)	(none)	ear morphology ears 101370 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:66	JaxKOMP-LAP	observation (SHIRPA)	(none)	snout size snout_size 101371 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:68	JaxKOMP-LAP	observation (SHIRPA)	(none)	forepaw size forepaw_size 101373 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:69	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindpaw size hindpaw_size 101374 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:70	JaxKOMP-LAP	observation (SHIRPA)	(none)	forepaw shape forepaw_shape 101375 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:71	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindpaw shape hindpaw_shape 101376 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:72	JaxKOMP-LAP	observation (SHIRPA)	(none)	forepaw position forepaw_position 101377 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:73	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindpaw position hindpaw_position 101378 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:74	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb digit number forelimb_digit_number 101379 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:75	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimb digit number hindlimb_digit_number 101380 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:76	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb digit size forelimb_digit_size 101381 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:77	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimb digit size hindlimb_digit_size 101382 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:78	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb digit shape forelimb_digit_shape 101383 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:79	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimb digit shape hindlimb_digit_shape 101384 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:80	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb digit position forelimb_digit_position 101385 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:81	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb nail number forelimb_nail_number 101386 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:82	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimb nail number hindlimb_nail_number 101387 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:83	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb nail length forelimb_nail_length 101388 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:84	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimb nail length hindlimb_nail_length 101389 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:85	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb nail shape forelimb_nail_shape 101390 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:86	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimb nail shape hindlimb_nail_shape 101391 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:87	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimb digit position hindlimb_digit_position 101392 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:88	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimb nail position forelimb_nail_position 101393 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:89	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimb nail position hindlimb_nail_position 101394 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:90	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin color whole body skin_color_whole_body 101395 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:91	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin color snout skin_color_snout 101396 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:92	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin color ear skin_color_ear 101397 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:93	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin color front paws skin_color_front_paws 101398 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:94	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin color back paws skin_color_back_paws 101399 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:95	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin color tail skin_color_tail 101400 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:96	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin texture whole body skin_texture_whole_body 101401 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:97	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin texture snout skin_texture_snout 101402 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:98	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin texture ear skin_texture_ear 101403 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:99	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin texture front paws skin_texture_front_paws 101404 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:100	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin texture back paw skin_texture_back_paw 101405 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:101	JaxKOMP-LAP	observation (SHIRPA)	(none)	skin texture tail skin_texture_tail 101406 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:108	JaxKOMP-LAP	observation (SHIRPA)	(none)	mouth morphology mouth_morphology 101413 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:109	JaxKOMP-LAP	observation (SHIRPA)	(none)	upper lip morphology upper_lip_morphology 101414 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:112	JaxKOMP-LAP	observation (SHIRPA)	(none)	forelimbs shape forelimbs_shape 101417 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:113	JaxKOMP-LAP	observation (SHIRPA)	(none)	hindlimbs size hindlimbs_size 101418 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:114	JaxKOMP-LAP	observation (SHIRPA)	(none)	lower lip morphology lower_lip_morphology 101419 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:248	JaxKOMP-LAP	ophthalmoscopy	(none)	eyes (present, absent) eye 101600 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:249	JaxKOMP-LAP	ophthalmoscopy	(none)	bulging eye bulging_eye 101601 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:250	JaxKOMP-LAP	ophthalmoscopy	(none)	eye hemorrhage or blood presence eye_hemorrhage_or_blood_presence 101602 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:251	JaxKOMP-LAP	ophthalmoscopy	(none)	eyelid morphology eyelid_morphology 101603 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:252	JaxKOMP-LAP	ophthalmoscopy	(none)	eye closure eye_closure 101604 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:253	JaxKOMP-LAP	ophthalmoscopy	(none)	narrow eye opening narrow_eye_opening 101605 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:256	JaxKOMP-LAP	ophthalmoscopy	(none)	pupil position pupil_position 101608 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:257	JaxKOMP-LAP	ophthalmoscopy	(none)	pupil shape pupil_shape 101609 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:258	JaxKOMP-LAP	ophthalmoscopy	(none)	pupil dilation pupil_dilation 101610 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:260	JaxKOMP-LAP	ophthalmoscopy	(none)	iris pigmentation iris_pigmentation 101612 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:261	JaxKOMP-LAP	slit lamp	(none)	lens lens 101613 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:262	JaxKOMP-LAP	slit lamp	(none)	lens opacity lens_opacity 101614 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:264	JaxKOMP-LAP	slit lamp	(none)	synechia synechia 101616 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:265	JaxKOMP-LAP	ophthalmoscopy	(none)	retina retina 101617 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:266	JaxKOMP-LAP	ophthalmoscopy	(none)	retinal pigmentation retinal_pigmentation 101618 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:267	JaxKOMP-LAP	ophthalmoscopy	(none)	retinal structure retinal_structure 101619 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:268	JaxKOMP-LAP	ophthalmoscopy	(none)	optic disc optic_disc 101620 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:269	JaxKOMP-LAP	ophthalmoscopy	(none)	retinal blood vessels retinal_blood_vessels 101621 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:270	JaxKOMP-LAP	ophthalmoscopy	(none)	persistence of hyaloid vascular system persistence_of_hyaloid_vascular_system 101622 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:271	JaxKOMP-LAP	ophthalmoscopy	(none)	retinal blood vessels pattern retinal_blood_vessels_pattern 101623 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:272	JaxKOMP-LAP	ophthalmoscopy	(none)	retinal blood vessels structure retinal_blood_vessels_structure 101625 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:273	JaxKOMP-LAP	slit lamp	(none)	cornea opacity cornea_opacity 101627 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:274	JaxKOMP-LAP	slit lamp	(none)	cornea vascularization cornea_vascularization 101628 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:275	JaxKOMP-LAP	slit lamp	(none)	corneal scleralization corneal_scleralization 101629 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:276	JaxKOMP-LAP	slit lamp	(none)	corneal deposits corneal_deposits 101630 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:277	JaxKOMP-LAP	slit lamp	(none)	iris transillumination iris_transillumination 101631 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:278	JaxKOMP-LAP	slit lamp	(none)	vitreous vitreous 101632 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:279	JaxKOMP-LAP	slit lamp	(none)	corneal mineralization corneal_mineralization 101633 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:280	JaxKOMP-LAP	slit lamp	(none)	corneal ulcer corneal_ulcer 101634 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:281	JaxKOMP-LAP	slit lamp	(none)	lacrimation lacrimation 101635 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:282	JaxKOMP-LAP	slit lamp	(none)	anterior chamber depth anterior_chamber_depth 101636 categorical	KOMP	150	both	72-79wks		2021

JaxKOMP-LAP:283	JaxKOMP-LAP	ABR test	(none)	auditory brainstem response (ABR) threshold, sound pressure level [dB] pip minimum_threshold 101501 6 kHz pip 12 kHz pip 18 kHz pip 24 kHz pip 30 kHz pip	KOMP		both	74-78wks	N=4	2017

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