MPD: Phenotype measures mapped to VT:0010442, behavior trait

Phenotype measures in JaxKOMP-EAP associated with ontology term
VT:0010442 'behavior trait'

All measures in this list are mapped to the ontology descendants of VT:0010442. None are mapped to VT:0010442 directly.

VT:0001392 locomotor behavior trait
VT:0001501 sleep behavior trait
VT:0001516 motor coordination/balance trait
VT:0001529 vocalization trait
VT:0001968 tactile sensory behavior trait
VT:0003492 involuntary movement trait
VT:0004262 physical strength trait
VT:0010459 behavioral response to novel environment trait
VT:0010462 defecation behavior trait
VT:0010471 exploratory behavior trait
VT:0010716 anxiety-related behavior trait
VT:0010725 startle reflex trait
VT:0010731 gait trait
VT:0010748 stereotypic behavior trait
VT:0015014 aggression-related behavior trait
VT:0015015 depression-related behavior trait

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
JaxKOMP-EAP:2	JaxKOMP-EAP	open field test	(none)	average speed in center of arena, 20 min test [cm/s] center_speed center_average_speed 100232 IMPC_OFD_017_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:3	JaxKOMP-EAP	open field test	(none)	distance traveled in center of arena, 20 min test [cm] center_distance center_distance_traveled 100233 IMPC_OFD_014_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:4	JaxKOMP-EAP	open field test	(none)	permanence time in center of arena, 20 min test [s] center_permanence center_permanence_time 100234 IMPC_OFD_016_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:5	JaxKOMP-EAP	open field test	(none)	number of clockwise revolution episodes, 20 min test [n] clockwise 100236	KOMP	1865	both	8wks	N=9	2021

JaxKOMP-EAP:6	JaxKOMP-EAP	open field test	(none)	permanence time in corners of arena, 20 min test [s] corners_permanence corners_permanence_time 100237	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:7	JaxKOMP-EAP	open field test	(none)	number of counter-clockwise revolution episodes, 20 min test [n] counter_clockwise 100238	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:8	JaxKOMP-EAP	open field test	(none)	distance traveled, 20 min test [cm] distance distance_traveled_5min_bins 100239 IMPC_OFD_005_001 1st 5min 2nd 5min 3rd 5min 4th 5min	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:12	JaxKOMP-EAP	open field test	(none)	total distance traveled, 20 min test [cm] distance_total distance_traveled_total 100243 IMPC_OFD_020_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:13	JaxKOMP-EAP	open field test	(none)	distance traveled habituation ratio, 20 min test [ratio] distance_habituation distance_traveled_habituation_ratio 100244	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:14	JaxKOMP-EAP	open field test	(none)	distance traveled slope, 20 min test [] distance_slope distance_traveled_slope 100245	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:15	JaxKOMP-EAP	open field test	(none)	number of fecal boli, 20 min test [n] fecal_boli 100246	KOMP	1225	both	8wks	N=9	2021

JaxKOMP-EAP:16	JaxKOMP-EAP	open field test	(none)	number of rears in 5 min bins, 20 min test [n] rears number_of_rears_5min_bins 100249 IMPC_OFD_006_001 1st 5min 2nd 5min 3rd 5min 4th 5min	KOMP	1865	both	8wks	N=9	2021

JaxKOMP-EAP:20	JaxKOMP-EAP	open field test	(none)	total number of rears, 20 min test [n] rears_total number_of_rears_total 100253	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:21	JaxKOMP-EAP	open field test	(none)	percentage of total time in center of arena, 20 min test [%] pct_center pcttime_center 100254 IMPC_OFD_022_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:22	JaxKOMP-EAP	open field test	(none)	percentage of total time in center, habituation ratio, 20 min test [ratio] pct_center_habituation pcttime_center_habituation_ratio 100255	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:23	JaxKOMP-EAP	open field test	(none)	percentage of total time in center of arena, slope, 20 min test [] pct_center_slope pcttime_center_slope 100256	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:24	JaxKOMP-EAP	open field test	(none)	percentage of total time in corners of arena, 20 min test [s] pct_corners pcttime_corners 100257	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:25	JaxKOMP-EAP	open field test	(none)	percentage of total time in corners, habituation ratio, 20 min test [%] pct_corners_habituation pcttime_corners_habituation_ratio 100258	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:26	JaxKOMP-EAP	open field test	(none)	percentage of total time in corners, slope, 20 min test [] pct_corners_slope pcttime_corners_slope 100259	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:27	JaxKOMP-EAP	open field test	(none)	average speed in periphery of arena, 20 min test [cm/s] periphery_speed periphery_average_speed 100260 IMPC_OFD_013_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:28	JaxKOMP-EAP	open field test	(none)	distance traveled in periphery of arena, 20 min test [cm] periphery_distance periphery_distance_traveled 100261 IMPC_OFD_010_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:29	JaxKOMP-EAP	open field test	(none)	permanence time in periphery of arena, 20 min test [s] periphery_permanence periphery_permanence_time 100262 IMPC_OFD_012_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:30	JaxKOMP-EAP	open field test	(none)	whole arena time spent mobile, 20 min test [s] time_mobile time_spent_mobile 100264	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:31	JaxKOMP-EAP	open field test	(none)	whole arena time spent vertical, 20 min test [s] time_vertical vertical_time 100265	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:32	JaxKOMP-EAP	open field test	(none)	whole arena average speed, 20 min test [cm/s] whole_speed whole_arena_average_speed 100266 IMPC_OFD_009_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:33	JaxKOMP-EAP	open field test	(none)	whole arena permanence time, 20 min test [s] whole_permanence whole_arena_permanence_time 100267 IMPC_OFD_008_001	KOMP	1525	both	8wks	N=8	2021

JaxKOMP-EAP:34	JaxKOMP-EAP	open field test	(none)	whole arena resting time, 20 min test [s] whole_rest whole_arena_resting_time 100268 IMPC_OFD_007_001	KOMP	1866	both	8wks	N=9	2021

JaxKOMP-EAP:35	JaxKOMP-EAP	grip strength	(none)	forelimb grip strength by trial [g] front_paws forelimb_strength 100561 trial1 trial2 trial3	KOMP	1725	both	8wks	N=8	2021

JaxKOMP-EAP:38	JaxKOMP-EAP	grip strength	(none)	forelimb and hindlimb grip strength by trial [g] all_paws forehind_limb_strength 100564 trial1 trial2 trial3	KOMP	1725	both	8wks	N=8	2021

JaxKOMP-EAP:42	JaxKOMP-EAP	grip strength	(none)	forelimb grip strength (mean of trials) [g] front_paws_mean forelimb_grip_mean 100571 average average normalized to bw	KOMP	1725	both	8wks	N=8	2021

JaxKOMP-EAP:44	JaxKOMP-EAP	grip strength	(none)	forelimb and hindlimb grip strength (mean of trials) [g] all_paws_mean fore_and_hind_limb_grip_mean 100572 average average normalized to bw	KOMP	1725	both	8wks	N=8	2021

JaxKOMP-EAP:126	JaxKOMP-EAP	observation (SHIRPA)	(none)	tremor tremor 100420 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:128	JaxKOMP-EAP	observation (SHIRPA)	(none)	transfer arousal transfer_arousal 100422 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:129	JaxKOMP-EAP	observation (SHIRPA)	(none)	locomotor activity (number of squares in the arena the mouse moves into with all four paws in first 30 s of test) [n] locomotor_activity 100423	KOMP	1700	both	9wks	N=8	2021

JaxKOMP-EAP:130	JaxKOMP-EAP	observation (SHIRPA)	(none)	gait (fluidity) gait 100424 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:132	JaxKOMP-EAP	observation (SHIRPA)	(none)	touch escape touch_escape 100426 categorical	KOMP	290	both	9wks		2021

JaxKOMP-EAP:134	JaxKOMP-EAP	observation (SHIRPA)	(none)	unexpected behaviors (circling, head bobbing, jumping, retropulsion) unexpected_behaviors 100428 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:138	JaxKOMP-EAP	observation (SHIRPA)	(none)	vocalization vocalization 100432 categorical	KOMP	1927	both	9wks		2021

JaxKOMP-EAP:139	JaxKOMP-EAP	observation (SHIRPA)	(none)	aggression aggression 100433 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:140	JaxKOMP-EAP	observation (SHIRPA)	(none)	head bobbing head_bobbing 100434 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:142	JaxKOMP-EAP	Y-maze	(none)	latency to leave start arm [s] latency_leave_start_arm latency_to_leave_start_arm 100815	KOMP	2	both	9wks	N=3	2018

JaxKOMP-EAP:143	JaxKOMP-EAP	Y-maze	(none)	total arm entries [n] arm_entries total_arm_entries 100816	KOMP	2	both	9wks	N=3	2018

JaxKOMP-EAP:144	JaxKOMP-EAP	Y-maze	(none)	number of triads [n] triads number_of_triads 100817	KOMP	2	both	9wks	N=3	2018

JaxKOMP-EAP:145	JaxKOMP-EAP	Y-maze	(none)	number of spontaneous alternations [n] spontaneous_alternations number_of_spontaneous_alternations 100818	KOMP	2	both	9wks	N=3	2018

JaxKOMP-EAP:146	JaxKOMP-EAP	Y-maze	(none)	alternation ratio [ratio] alternation_ratio 100819	KOMP	2	both	9wks	N=3	2018

JaxKOMP-EAP:147	JaxKOMP-EAP	hole board test	(none)	total number of hole pokes, 20 min test [n] tot_hole_pokes total_hole_pokes 100451	KOMP	1485	both	10wks	N=8	2021

JaxKOMP-EAP:148	JaxKOMP-EAP	hole board test	(none)	number of hole pokes by individual hole number, 20 min test [n] hole_pokes_by_hole total_hole_pokes_hole_N 100452 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16	KOMP	1484	both	10wks	N=8	2021

JaxKOMP-EAP:164	JaxKOMP-EAP	light-dark box	(none)	latency to enter dark zone, 20 min test [s] reaction_time_LD reaction_time 100480	KOMP	1853	both	10wks	N=9	2021

JaxKOMP-EAP:165	JaxKOMP-EAP	light-dark box	(none)	number of transitions between light and dark zones, 20 min test [n] transitions_LD side_changes 100481	KOMP	1853	both	10wks	N=9	2021

JaxKOMP-EAP:166	JaxKOMP-EAP	light-dark box	(none)	time spent in light zone, 20 min test [s] light_dur_LD left_side_time_spent 100482	KOMP	1853	both	10wks	N=9	2021

JaxKOMP-EAP:167	JaxKOMP-EAP	light-dark box	(none)	time mobile in light zone, 20 min test [s] light_mobile_LD left_side_mobile_time_spent 100483	KOMP	1853	both	10wks	N=9	2021

JaxKOMP-EAP:168	JaxKOMP-EAP	light-dark box	(none)	time spent in dark zone, 20 min test [s] dark_dur_LD right_side_time_spent 100484	KOMP	1853	both	10wks	N=9	2021

JaxKOMP-EAP:169	JaxKOMP-EAP	light-dark box	(none)	time mobile in dark zone, 20 min test [s] dark_mobile_LD right_side_mobile_time_spent 100485	KOMP	1853	both	10wks	N=9	2021

JaxKOMP-EAP:170	JaxKOMP-EAP	light-dark box	(none)	fecal boli count, 20 min test [n] defecation_LD fecal_boli_ld 100486	KOMP	1235	both	10wks	N=9	2021

JaxKOMP-EAP:171	JaxKOMP-EAP	light-dark box	(none)	percentage of total time in dark zone, 20 min test [%] pct_dark_LD pct_time_in_dark 100487	KOMP	1853	both	10wks	N=9	2021

JaxKOMP-EAP:172	JaxKOMP-EAP	light-dark box	(none)	percentage of total time in light zone, 20 min test [%] pct_light_LD pct_time_in_light 100488	KOMP	1853	both	10wks	N=9	2021

JaxKOMP-EAP:179	JaxKOMP-EAP	acoustic startle test	(none)	average baseline movement during background noise [mV] avg_background bn_avg 100508	KOMP	1788	both	10wks	N=8	2021

JaxKOMP-EAP:180	JaxKOMP-EAP	acoustic startle test	(none)	average startle response to pre-pulse [mV] avg_pp ppN_avg 100509 pp1 pp2 pp3	KOMP	1788	both	10wks	N=8	2021

JaxKOMP-EAP:183	JaxKOMP-EAP	acoustic startle test	(none)	average startle response to full pulse (120 dB) [mV] avg_s s_avg 100507	KOMP	1788	both	10wks	N=8	2021

JaxKOMP-EAP:184	JaxKOMP-EAP	acoustic startle test	(none)	average startle response to full pulse (120 dB) preceded by pre-pulse [mV] avg_pp_s ppN_s_avg 100510 pp1 pp2 pp3	KOMP	1788	both	10wks	N=8	2021

JaxKOMP-EAP:190	JaxKOMP-EAP	acoustic startle test	(none)	corrected average startle response to full pulse (120 dB) minus average baseline movement during background noise [mV] avg_corrected_s corrected_s_avg 100521	KOMP	1788	both	10wks	N=8	2021

JaxKOMP-EAP:191	JaxKOMP-EAP	acoustic startle test	(none)	corrected average startle response to pre-pulse and full pulse (120 dB) minus average startle response to same pre-pulse [mV] avg_corrected_pp_s corrected_ppN_avg 100522 pp1 pp2 pp3	KOMP	1788	both	10wks	N=8	2021

JaxKOMP-EAP:198	JaxKOMP-EAP	acoustic startle test	(none)	maximum baseline movement during background noise [mV] max_background bn 100532	KOMP	1788	both	10wks	N=8	2021

JaxKOMP-EAP:199	JaxKOMP-EAP	acoustic startle test	(none)	maximum startle response to pre-pulse [mV] max_pp ppN 100533 pp1 pp2 pp3	KOMP	1788	both	10wks	N=8	2021

JaxKOMP-EAP:203	JaxKOMP-EAP	acoustic startle test	(none)	maximum startle response to full pulse (120 dB) preceded by pre-pulse [mV] max_pp_s ppN_s 100537 74 dB 78 dB 82 dB	KOMP	1788	both	10wks	N=8	2021

JaxKOMP-EAP:206	JaxKOMP-EAP	acoustic startle test	(none)	maximum percent pre-pulse inhibition to full pulse (120 dB) preceded by pre-pulse [%] max_ppi pct_ppi_ppN 100540 pp2 pp3	KOMP	1788	both	10wks	N=8	2021

JaxKOMP-EAP:210	JaxKOMP-EAP	acoustic startle test	(none)	corrected maximum startle response to full pulse (120 dB) minus maximum baseline movement during background noise [mV] max_corrected_s corrected_s_vmax 100550	KOMP	1788	both	10wks	N=8	2021

JaxKOMP-EAP:211	JaxKOMP-EAP	acoustic startle test	(none)	corrected maximum startle response to pre-pulse and full pulse (120 dB) minus maximum startle response to same pre-pulse [mV] max_corrected_pp_s corrected_ppN_vmax 100551 pp1 pp2 pp3	KOMP	1788	both	10wks	N=8	2021

JaxKOMP-EAP:235	JaxKOMP-EAP	tail suspension test	(none)	latency to immobility, 5 min test [s] immob_latency_TS latency_to_immobility 100586	KOMP	325	both	11wks	N=10	2015

JaxKOMP-EAP:236	JaxKOMP-EAP	tail suspension test	(none)	duration of immobility, 5 min test [s] immob_duration_TS time_immobile 100587	KOMP	325	both	11wks	N=10	2015

JaxKOMP-EAP:237	JaxKOMP-EAP	tail suspension test	(none)	climbing, 5 min test (yes, no) climbing 100588 categorical	KOMP	343	both	11wks		2015

JaxKOMP-EAP:238	JaxKOMP-EAP	rotarod	(none)	trial number [n] trial_rota trial 100589 categorical	KOMP	598	both	11wks		2016

JaxKOMP-EAP:239	JaxKOMP-EAP	rotarod	(none)	mean latency to fall off accelerating rotarod (4-40 rpm/ 5 min) over 5 trials [s] latency_rota duration 100590	KOMP	557	both	11wks	N=10	2016

JaxKOMP-EAP:240	JaxKOMP-EAP	rotarod	(none)	outcome of accelerating rotarod (4-40 rpm/ 5 min) over 5 trials outcome_rota outcome 100591 categorical	KOMP	598	both	11wks		2016

JaxKOMP-EAP:241	JaxKOMP-EAP	rotarod	(none)	mean duration on accelerating rotarod (4-40 rpm/5 min) over 5 trials [s] duration_rota average_duration 100592	KOMP	557	both	11wks	N=10	2016

JaxKOMP-EAP:242	JaxKOMP-EAP	rotarod	(none)	learning difference on accelerating rotarod (4-40 rpm/5 min) over 5 trials [s] learn_diff_rota learning_difference 100593	KOMP	557	both	11wks	N=10	2016

JaxKOMP-EAP:243	JaxKOMP-EAP	rotarod	(none)	learning slope on accelerating rotarod (4-40 rpm/5 min) over 5 trials [] learn_slope_rota learning_slope 100594	KOMP	557	both	11wks	N=10	2016

JaxKOMP-EAP:349	JaxKOMP-EAP	monitoring system	(none)	sleep data confidence level (<0.6=questionable; 1=good quality) sleep_confidence data_confidence_level 100690	KOMP	141	both	15wks	N=7	2016

JaxKOMP-EAP:350	JaxKOMP-EAP	monitoring system	(none)	mean percentage of time sleeping over 24 h periods [%] sleep_pct_daily sleep_daily_percent 100691	KOMP	245	both	15wks	N=6	2016

JaxKOMP-EAP:351	JaxKOMP-EAP	monitoring system	(none)	mean percentage of time sleeping with lights on [%] sleep_pct_light sleep_light_phase_percent 100692	KOMP	245	both	15wks	N=6	2016

JaxKOMP-EAP:352	JaxKOMP-EAP	monitoring system	(none)	mean of sleep bout lengths [s] sleep_bouts_tot sleep_bout_lengths_mean 100693	KOMP	245	both	15wks	N=6	2016

JaxKOMP-EAP:353	JaxKOMP-EAP	monitoring system	(none)	mean of sleep bout lengths with lights on [s] sleep_bouts_light light_sleep_bout_lengths_mean 100695	KOMP	245	both	15wks	N=6	2016

JaxKOMP-EAP:354	JaxKOMP-EAP	monitoring system	(none)	mean of sleep bout lengths with lights off [s] sleep_bouts_dark dark_sleep_bout_lengths_mean 100697	KOMP	245	both	15wks	N=6	2016

JaxKOMP-EAP:355	JaxKOMP-EAP	monitoring system	(none)	activity onset with respect to dark onset [h] activity_onset activity_onset_wrt_dark_onset_median 100699	KOMP	8	both	15wks	N=7	2016

JaxKOMP-EAP:356	JaxKOMP-EAP	monitoring system	(none)	peak wake with respect to dark onset median [h] peak_wake peak_wake_wrt_dark_onset_median 100700	KOMP	245	both	15wks	N=6	2016

JaxKOMP-EAP:357	JaxKOMP-EAP	monitoring system	(none)	mean breath rate during-sleep [Hz] breath_rate breath_rate_during_sleep_mean 100701	KOMP	245	both	15wks	N=6	2016

JaxKOMP-EAP:358	JaxKOMP-EAP	monitoring system	(none)	mean percentage of time spent sleeping with lights off [%] sleep_pct_dark sleep_dark_phase_percent 100703	KOMP	245	both	15wks	N=6	2016

JaxKOMP-EAP:359	JaxKOMP-EAP	monitoring system	(none)	sleep test duration [h] sleep_test_duration test_duration 100704	KOMP	26	both	15wks	N=9	2016

JaxKOMP-EAP:360	JaxKOMP-EAP	monitoring system	(none)	differential wake percentages during light and dark phase [%] diurnal_wake_ratio diurnal_wake_ratio_median 100705	KOMP	245	both	15wks	N=6	2016

JaxKOMP-EAP:361	JaxKOMP-EAP	monitoring system	(none)	percentage of time awake one hour before and after light onset [%] light_onset_wake light_onset_wake_median 100706	KOMP	245	both	15wks	N=6	2016

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