MPD: Phenotype measures mapped to VT:0002160, reproductive system morphology trait

Phenotype measures in Shorter4 associated with ontology term
VT:0002160 'reproductive system morphology trait'

All measures in this list are mapped to the ontology descendants of VT:0002160. None are mapped to VT:0002160 directly.

VT:0002673 sperm quantity
VT:0002997 seminal gland size trait
VT:0010019 epididymis mass
VT:0010042 sperm morphology trait
VT:1000644 testis mass

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Shorter4:2	Shorter4	organ weights	(none)	testis weight [g] testis 110094 left right	CC	12	m	15-33wks	N=3	2019

Shorter4:4	Shorter4	organ weights	(none)	testis weight mean [g] testis_mean 110096	CC	12	m	15-33wks	N=3	2019

Shorter4:5	Shorter4	organ weights	(none)	testis weight as a percentage of body weight [%] testis_pct_bw 110097	CC	12	m	15-33wks	N=3	2019

Shorter4:6	Shorter4	organ weights	(none)	epididymis plus vas deferens weight [g] epidid_vd 110098 left right	CC	12	m	15-33wks	N=3	2019

Shorter4:8	Shorter4	organ weights	(none)	epididymis plus vas deferens weight mean [g] epidid_vd_mean 110100	CC	12	m	15-33wks	N=3	2019

Shorter4:9	Shorter4	organ weights	(none)	epididymis plus vas deferens weight as a percentage of body weight [%] epidid_vd_pct_bw 110101	CC	12	m	15-33wks	N=3	2019

Shorter4:10	Shorter4	organ weights	(none)	seminal vesicles weight total [g] semin_vesi_tot 110102	CC	12	m	15-33wks	N=3	2019

Shorter4:11	Shorter4	organ weights	(none)	seminal vesicles weight as a percentage of body weight [%] semin_vesi_pct_bw 110103	CC	12	m	15-33wks	N=3	2019

Shorter4:12	Shorter4	sperm count	(none)	sperm count per mouse (x 10⁶) [n] sperm_count 110104	CC	12	m	15-33wks	N=3	2019

Shorter4:13	Shorter4	sperm count	(none)	sperm count per mg testis weight (x 10³) [n/mg] sperm_adj 110105	CC	12	m	15-33wks	N=3	2019

Shorter4:22	Shorter4	histopathology	(none)	percentage of sperm with normal morphology [%] normal_sperm 110114	CC	12	m	15-33wks	N=3	2019

Shorter4:23	Shorter4	histopathology	(none)	percentage of sperm with abnormal head shape [%] abnormal_head 110115	CC	12	m	15-33wks	N=3	2019

Shorter4:24	Shorter4	histopathology	(none)	percentage of sperm with abnormal tail bending [%] abnormal_tail 110116	CC	12	m	15-33wks	N=3	2019

Shorter4:25	Shorter4	histopathology	(none)	percentage of sperm with broken tails [%] broken_tail 110117	CC	12	m	15-33wks	N=3	2019

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