MPD: Phenotype measures mapped to MA:0000326, reproductive system

Phenotype measures in Shorter4 associated with ontology term
MA:0000326 'reproductive system'

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All measures in this list are mapped to the ontology descendants of MA:0000326. None are mapped to MA:0000326 directly.

MA:0000397 epididymis
MA:0000410 seminal vesicle
MA:0000411 testis
MA:0000413 vas deferens
MA:0002765 male germ cell

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Shorter4:2	Shorter4	organ weights	(none)	testis weight [g] testis 110094 left right	CC	12	m	15-33wks	N=3	2019

Shorter4:4	Shorter4	organ weights	(none)	testis weight mean [g] testis_mean 110096	CC	12	m	15-33wks	N=3	2019

Shorter4:5	Shorter4	organ weights	(none)	testis weight as a percentage of body weight [%] testis_pct_bw 110097	CC	12	m	15-33wks	N=3	2019

Shorter4:6	Shorter4	organ weights	(none)	epididymis plus vas deferens weight [g] epidid_vd 110098 left right	CC	12	m	15-33wks	N=3	2019

Shorter4:8	Shorter4	organ weights	(none)	epididymis plus vas deferens weight mean [g] epidid_vd_mean 110100	CC	12	m	15-33wks	N=3	2019

Shorter4:9	Shorter4	organ weights	(none)	epididymis plus vas deferens weight as a percentage of body weight [%] epidid_vd_pct_bw 110101	CC	12	m	15-33wks	N=3	2019

Shorter4:10	Shorter4	organ weights	(none)	seminal vesicles weight total [g] semin_vesi_tot 110102	CC	12	m	15-33wks	N=3	2019

Shorter4:11	Shorter4	organ weights	(none)	seminal vesicles weight as a percentage of body weight [%] semin_vesi_pct_bw 110103	CC	12	m	15-33wks	N=3	2019

Shorter4:12	Shorter4	sperm count	(none)	sperm count per mouse (x 10⁶) [n] sperm_count 110104	CC	12	m	15-33wks	N=3	2019

Shorter4:13	Shorter4	sperm count	(none)	sperm count per mg testis weight (x 10³) [n/mg] sperm_adj 110105	CC	12	m	15-33wks	N=3	2019

Shorter4:14	Shorter4	microscopy	(none)	percentage of sperm that are motile [%] motile 110106 10 min 90 min	CC	12	m	15-33wks	N=3	2019

Shorter4:16	Shorter4	microscopy	(none)	percentage of motile sperm that are 'vigorous' [%] vigorous 110108 10 min 90 min	CC	12	m	15-33wks	N=3	2019

Shorter4:18	Shorter4	microscopy	(none)	percentage of motile sperm that are 'hyperactivated' [%] hyper 110110 10 min 90 min	CC	12	m	15-33wks	N=3	2019

Shorter4:20	Shorter4	microscopy	(none)	sperm mean curvilinear velocity [µm/s] VCL 110112 10 min 90 min	CC	12	m	15-33wks	N=3	2019

Shorter4:22	Shorter4	histopathology	(none)	percentage of sperm with normal morphology [%] normal_sperm 110114	CC	12	m	15-33wks	N=3	2019

Shorter4:23	Shorter4	histopathology	(none)	percentage of sperm with abnormal head shape [%] abnormal_head 110115	CC	12	m	15-33wks	N=3	2019

Shorter4:24	Shorter4	histopathology	(none)	percentage of sperm with abnormal tail bending [%] abnormal_tail 110116	CC	12	m	15-33wks	N=3	2019

Shorter4:25	Shorter4	histopathology	(none)	percentage of sperm with broken tails [%] broken_tail 110117	CC	12	m	15-33wks	N=3	2019

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