Phenotype measure:   Kliethermes1   time_novel_NP


  STRAIN COMPARISON PLOT
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Kliethermes1 - time spent in novel compartment of novelty preference apparatus, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means640   s 701   s
Median of the strain means708   s 741   s
SD of the strain means± 184 ± 135
Coefficient of variation (CV)0.288 0.192
Min–max range of strain means154   –   780   s 283   –   830   s
Mean sample size per strain6.3   mice 6.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 129313.5297 129313.5297 3.2264 0.0744
strain 13 3551581.3329 273198.5641 6.8164 < 0.0001
sex:strain 13 575661.1148 44281.6242 1.1048 0.3587
Residuals 157 6292539.4566 40079.8692


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 360.0 353.0   6 144.0 0.979 -1.52
129S1/SvImJ m 657.0 255.0   6 104.0 0.389 389.0, 953.0 -0.33
A/J f 154.0 250.0   6 102.0 1.63 -2.64
A/J m 283.0 438.0   6 179.0 1.55 -3.1
AKR/J f 780.0 135.0   6 55.3 0.174 599.0, 1002.0 0.76
AKR/J m 830.0 98.7   6 40.3 0.119 672.0, 932.0 0.96
BALB/cByJ f 467.0 427.0   5 191.0 0.915 -0.94
BALB/cByJ m 760.0 390.0   6 159.0 0.513 0.44
BTBR T+ Itpr3tf/J f 731.0 132.0   6 53.8 0.18 564.0, 913.0 0.5
BTBR T+ Itpr3tf/J m 724.0 152.0   6 62.1 0.21 451.0, 876.0 0.17
C3H/HeJ f 723.0 33.6   6 13.7 0.0465 696.0, 782.0 0.45
C3H/HeJ m 769.0 43.8   6 17.9 0.057 724.0, 817.0 0.5
C57BL/6J f 686.0 96.7   11 29.1 0.141 571.0, 917.0 0.25
C57BL/6J m 731.0 86.1   12 24.8 0.118 632.0, 890.0 0.22
C57L/J f 700.0 142.0   6 58.0 0.203 559.0, 949.0 0.33
C57L/J m 758.0 119.0   6 48.7 0.157 605.0, 940.0 0.42
DBA/2J f 771.0 158.0   12 45.6 0.205 479.0, 1021.0 0.71
DBA/2J m 737.0 123.0   9 41.0 0.167 548.0, 894.0 0.27
FVB/NJ f 763.0 151.0   6 61.7 0.198 533.0, 909.0 0.67
FVB/NJ m 774.0 27.4   6 11.2 0.0353 721.0, 797.0 0.54
NOD/ShiLtJ f 645.0 74.0   6 30.2 0.115 553.0, 748.0 0.03
NOD/ShiLtJ m 736.0 88.5   6 36.1 0.12 646.0, 850.0 0.26
NZB/BlNJ f 707.0 193.0   6 78.7 0.273 387.0, 863.0 0.37
NZB/BlNJ m 745.0 96.3   6 39.3 0.129 594.0, 872.0 0.32
PERA/EiJ f 758.0 95.1   5 42.5 0.126 654.0, 855.0 0.64
PERA/EiJ m 566.0 447.0   6 182.0 0.789 -1.0
PL/J f 708.0 69.5   6 28.4 0.0983 612.0, 790.0 0.37
PL/J m 747.0 39.7   5 17.7 0.0531 681.0, 788.0 0.34


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 360.2833 81.7311 521.7178 198.8489
129S1/SvImJ m 656.6833 81.7311 818.1178 495.2489
A/J f 153.5 81.7311 314.9344 -7.9344
A/J m 282.9667 81.7311 444.4011 121.5322
AKR/J f 780.1667 81.7311 941.6011 618.7322
AKR/J m 830.3667 81.7311 991.8011 668.9322
BALB/cByJ f 467.0 89.532 643.8426 290.1574
BALB/cByJ m 759.85 81.7311 921.2844 598.4156
BTBR T+ Itpr3tf/J f 731.1667 81.7311 892.6011 569.7322
BTBR T+ Itpr3tf/J m 724.3667 81.7311 885.8011 562.9322
C3H/HeJ f 722.65 81.7311 884.0844 561.2156
C3H/HeJ m 768.6167 81.7311 930.0511 607.1822
C57BL/6J f 685.9182 60.3624 805.1454 566.6909
C57BL/6J m 731.375 57.7926 845.5264 617.2236
C57L/J f 699.6667 81.7311 861.1011 538.2322
C57L/J m 758.15 81.7311 919.5844 596.7156
DBA/2J f 771.3917 57.7926 885.5431 657.2403
DBA/2J m 736.9444 66.7332 868.7551 605.1338
FVB/NJ f 762.8667 81.7311 924.3011 601.4322
FVB/NJ m 774.3333 81.7311 935.7678 612.8989
NOD/ShiLtJ f 645.3667 81.7311 806.8011 483.9322
NOD/ShiLtJ m 736.1 81.7311 897.5344 574.6656
NZB/BlNJ f 706.95 81.7311 868.3844 545.5156
NZB/BlNJ m 745.4 81.7311 906.8344 583.9656
PERA/EiJ f 757.62 89.532 934.4626 580.7774
PERA/EiJ m 566.2667 81.7311 727.7011 404.8322
PL/J f 707.8 81.7311 869.2344 546.3656
PL/J m 746.7 89.532 923.5426 569.8574


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 508.4833 57.7926 622.6347 394.3319
A/J both 218.2333 57.7926 332.3847 104.0819
AKR/J both 805.2667 57.7926 919.4181 691.1153
BALB/cByJ both 613.425 60.6134 733.148 493.702
BTBR T+ Itpr3tf/J both 727.7667 57.7926 841.9181 613.6153
C3H/HeJ both 745.6333 57.7926 859.7847 631.4819
C57BL/6J both 708.6466 41.784 791.1779 626.1153
C57L/J both 728.9083 57.7926 843.0597 614.7569
DBA/2J both 754.1681 44.1399 841.3526 666.9835
FVB/NJ both 768.6 57.7926 882.7514 654.4486
NOD/ShiLtJ both 690.7333 57.7926 804.8847 576.5819
NZB/BlNJ both 726.175 57.7926 840.3264 612.0236
PERA/EiJ both 661.9433 60.6134 781.6663 542.2203
PL/J both 727.25 60.6134 846.973 607.527




  GWAS USING LINEAR MIXED MODELS