Phenotype measure:   Kliethermes1   activity_fam_prior_NP

ID, description, units MPD:59911   activity_fam_prior_NP   activity (beam breaks) in familiar compartment of novelty preference apparatus prior to preference test   [n]
Data set, strains Kliethermes1   inbred   14 strains     sex: both     age: 8wks
Procedure two chamber assay
Ontology mappings

  STRAIN COMPARISON PLOT
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Kliethermes1 - activity (beam breaks) in familiar compartment of novelty preference apparatus prior to preference test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means3318   n 3578   n
Median of the strain means3212   n 3316   n
SD of the strain means± 1640 ± 1521
Coefficient of variation (CV)0.494 0.425
Min–max range of strain means1098   –   6829   n 1391   –   6260   n
Mean sample size per strain6.3   mice 6.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4278283.3941 4278283.3941 9.0213 0.0031
strain 13 392650040.972 30203849.3055 63.6887 < 0.0001
sex:strain 13 24748440.2157 1903726.1704 4.0143 < 0.0001
Residuals 157 74455970.0343 474241.8474


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1238.0 753.0   6 307.0 0.608 478.0, 2600.0 -1.27
129S1/SvImJ m 2627.0 886.0   6 362.0 0.337 1454.0, 3526.0 -0.63
A/J f 1098.0 192.0   6 78.3 0.175 856.0, 1332.0 -1.35
A/J m 1391.0 273.0   6 111.0 0.196 926.0, 1770.0 -1.44
AKR/J f 3444.0 742.0   6 303.0 0.216 2364.0, 4220.0 0.08
AKR/J m 3839.0 651.0   6 266.0 0.17 3096.0, 4736.0 0.17
BALB/cByJ f 2922.0 885.0   5 396.0 0.303 1706.0, 3982.0 -0.24
BALB/cByJ m 3406.0 908.0   6 371.0 0.267 2556.0, 4854.0 -0.11
BTBR T+ Itpr3tf/J f 3426.0 652.0   6 266.0 0.19 2960.0, 4706.0 0.07
BTBR T+ Itpr3tf/J m 3920.0 788.0   6 322.0 0.201 2620.0, 4724.0 0.22
C3H/HeJ f 2380.0 250.0   6 102.0 0.105 2016.0, 2708.0 -0.57
C3H/HeJ m 1995.0 161.0   6 65.7 0.0807 1774.0, 2180.0 -1.04
C57BL/6J f 4964.0 539.0   11 162.0 0.108 4116.0, 5734.0 1.0
C57BL/6J m 4725.0 1192.0   12 344.0 0.252 3206.0, 7692.0 0.75
C57L/J f 5357.0 1106.0   6 452.0 0.206 3952.0, 7194.0 1.24
C57L/J m 6260.0 674.0   6 275.0 0.108 5420.0, 6964.0 1.76
DBA/2J f 2289.0 328.0   12 94.8 0.143 1706.0, 2756.0 -0.63
DBA/2J m 3227.0 456.0   9 152.0 0.141 2584.0, 3936.0 -0.23
FVB/NJ f 4479.0 569.0   6 232.0 0.127 3794.0, 5192.0 0.71
FVB/NJ m 5061.0 443.0   6 181.0 0.0876 4468.0, 5662.0 0.97
NOD/ShiLtJ f 6829.0 784.0   6 320.0 0.115 5656.0, 7736.0 2.14
NOD/ShiLtJ m 6150.0 855.0   6 349.0 0.139 5152.0, 7548.0 1.69
NZB/BlNJ f 1606.0 385.0   6 157.0 0.239 1072.0, 2008.0 -1.04
NZB/BlNJ m 2656.0 543.0   6 222.0 0.204 1930.0, 3422.0 -0.61
PERA/EiJ f 3416.0 642.0   5 287.0 0.188 2530.0, 4196.0 0.06
PERA/EiJ m 1831.0 743.0   6 303.0 0.406 474.0, 2520.0 -1.15
PL/J f 3009.0 381.0   6 155.0 0.126 2632.0, 3510.0 -0.19
PL/J m 3006.0 849.0   5 380.0 0.282 2144.0, 4286.0 -0.38


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1238.3333 281.1411 1793.6402 683.0265
129S1/SvImJ m 2627.0 281.1411 3182.3068 2071.6932
A/J f 1098.3333 281.1411 1653.6402 543.0265
A/J m 1391.3333 281.1411 1946.6402 836.0265
AKR/J f 3444.0 281.1411 3999.3068 2888.6932
AKR/J m 3838.6667 281.1411 4393.9735 3283.3598
BALB/cByJ f 2921.6 307.9746 3529.9081 2313.2919
BALB/cByJ m 3405.6667 281.1411 3960.9735 2850.3598
BTBR T+ Itpr3tf/J f 3425.6667 281.1411 3980.9735 2870.3598
BTBR T+ Itpr3tf/J m 3920.3333 281.1411 4475.6402 3365.0265
C3H/HeJ f 2379.6667 281.1411 2934.9735 1824.3598
C3H/HeJ m 1995.0 281.1411 2550.3068 1439.6932
C57BL/6J f 4964.3636 207.6364 5374.4849 4554.2424
C57BL/6J m 4725.3333 198.7968 5117.9946 4332.6721
C57L/J f 5356.6667 281.1411 5911.9735 4801.3598
C57L/J m 6260.0 281.1411 6815.3068 5704.6932
DBA/2J f 2289.1667 198.7968 2681.8279 1896.5054
DBA/2J m 3226.8889 229.5507 3680.295 2773.4828
FVB/NJ f 4478.6667 281.1411 5033.9735 3923.3598
FVB/NJ m 5061.0 281.1411 5616.3068 4505.6932
NOD/ShiLtJ f 6829.3333 281.1411 7384.6402 6274.0265
NOD/ShiLtJ m 6150.3333 281.1411 6705.6402 5595.0265
NZB/BlNJ f 1606.3333 281.1411 2161.6402 1051.0265
NZB/BlNJ m 2656.0 281.1411 3211.3068 2100.6932
PERA/EiJ f 3415.6 307.9746 4023.9081 2807.2919
PERA/EiJ m 1831.0 281.1411 2386.3068 1275.6932
PL/J f 3008.6667 281.1411 3563.9735 2453.3598
PL/J m 3006.4 307.9746 3614.7081 2398.0919


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1932.6667 198.7968 2325.3279 1540.0054
A/J both 1244.8333 198.7968 1637.4946 852.1721
AKR/J both 3641.3333 198.7968 4033.9946 3248.6721
BALB/cByJ both 3163.6333 208.4998 3575.4599 2751.8068
BTBR T+ Itpr3tf/J both 3673.0 198.7968 4065.6612 3280.3388
C3H/HeJ both 2187.3333 198.7968 2579.9946 1794.6721
C57BL/6J both 4844.8485 143.7298 5128.7421 4560.9549
C57L/J both 5808.3333 198.7968 6200.9946 5415.6721
DBA/2J both 2758.0278 151.8335 3057.9277 2458.1278
FVB/NJ both 4769.8333 198.7968 5162.4946 4377.1721
NOD/ShiLtJ both 6489.8333 198.7968 6882.4946 6097.1721
NZB/BlNJ both 2131.1667 198.7968 2523.8279 1738.5054
PERA/EiJ both 2623.3 208.4998 3035.1266 2211.4734
PL/J both 3007.5333 208.4998 3419.3599 2595.7068




  GWAS USING LINEAR MIXED MODELS