Project measure / variable:   GMC01   periphery_speed

ID, description, units MPD:55074   periphery_speed   average speed in periphery, 20 min test   [cm/s]  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - average speed in periphery, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means14.8   cm/s 14.0   cm/s
Median of the strain means13.3   cm/s 12.6   cm/s
SD of the strain means± 10.2 ± 9.42
Coefficient of variation (CV)0.689 0.673
Min–max range of strain means2.37   –   32.8   cm/s 3.73   –   30.8   cm/s
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 86.4927 86.4927 6.2844 0.0128
strain 7 22333.0985 3190.4426 231.8108 < 0.0001
sex:strain 7 92.3974 13.1996 0.9591 0.4617
Residuals 259 3564.6514 13.7631


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 6.86 7.62   16 1.9 1.11 1.4, 34.2 -0.78
129S1/SvImJ m 6.41 1.38   15 0.357 0.216 3.6, 8.8 -0.8
A/J f 2.37 1.13   16 0.282 0.477 0.9, 4.3 -1.22
A/J m 3.73 3.13   16 0.783 0.839 1.9, 15.0 -1.09
C57BL/6J f 23.4 3.44   16 0.86 0.147 16.3, 28.8 0.84
C57BL/6J m 23.1 4.72   16 1.18 0.204 16.3, 35.7 0.97
CAST/EiJ f 13.4 2.07   19 0.474 0.154 9.1, 17.4 -0.14
CAST/EiJ m 12.4 2.17   18 0.512 0.175 10.1, 16.4 -0.17
NOD/ShiLtJ f 32.8 6.06   18 1.43 0.185 24.3, 45.4 1.76
NOD/ShiLtJ m 30.8 4.82   16 1.2 0.156 22.2, 39.8 1.79
NZO/HlLtJ f 6.01 2.07   17 0.502 0.344 3.9, 10.7 -0.86
NZO/HlLtJ m 5.28 1.79   17 0.435 0.34 3.2, 10.5 -0.92
PWK/PhJ f 13.2 2.65   20 0.592 0.201 9.1, 19.2 -0.16
PWK/PhJ m 12.7 2.58   22 0.549 0.203 8.5, 18.0 -0.14
WSB/EiJ f 20.5 3.99   18 0.941 0.195 13.7, 29.1 0.56
WSB/EiJ m 17.5 3.74   15 0.965 0.213 11.9, 25.6 0.37


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 6.8625 0.9275 8.6888 5.0362
129S1/SvImJ m 6.4133 0.9579 8.2996 4.5271
A/J f 2.3687 0.9275 4.1951 0.5424
A/J m 3.7312 0.9275 5.5576 1.9049
C57BL/6J f 23.3688 0.9275 25.1951 21.5424
C57BL/6J m 23.1187 0.9275 24.9451 21.2924
CAST/EiJ f 13.4211 0.8511 15.097 11.7451
CAST/EiJ m 12.45 0.8744 14.1719 10.7281
NOD/ShiLtJ f 32.8 0.8744 34.5219 31.0781
NOD/ShiLtJ m 30.8 0.9275 32.6263 28.9737
NZO/HlLtJ f 6.0059 0.8998 7.7777 4.2341
NZO/HlLtJ m 5.2765 0.8998 7.0483 3.5047
PWK/PhJ f 13.175 0.8296 14.8085 11.5415
PWK/PhJ m 12.7045 0.7909 14.2621 11.147
WSB/EiJ f 20.4944 0.8744 22.2163 18.7726
WSB/EiJ m 17.54 0.9579 19.4262 15.6538


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 6.6379 0.6667 7.9507 5.3252
A/J both 3.05 0.6558 4.3414 1.7586
C57BL/6J both 23.2438 0.6558 24.5352 21.9523
CAST/EiJ both 12.9355 0.6101 14.137 11.7341
NOD/ShiLtJ both 31.8 0.6373 33.055 30.545
NZO/HlLtJ both 5.6412 0.6362 6.894 4.3883
PWK/PhJ both 12.9398 0.5731 14.0683 11.8113
WSB/EiJ both 19.0172 0.6485 20.2942 17.7402




  GWAS USING LINEAR MIXED MODELS