Project measure / variable:   GMC01   periphery_distance

ID, description, units MPD:55071   periphery_distance   distance traveled in periphery, 20 min test   [cm]  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - distance traveled in periphery, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means12880   cm 12693   cm
Median of the strain means11426   cm 10952   cm
SD of the strain means± 7500 ± 7543
Coefficient of variation (CV)0.582 0.594
Min–max range of strain means2820   –   24278   cm 4418   –   25733   cm
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 13152355.7981 13152355.7981 1.057 0.3049
strain 7 12983742549.1367 1854820364.1624 149.0652 < 0.0001
sex:strain 7 91001554.9839 13000222.1406 1.0448 0.4002
Residuals 259 3222741165.7104 12443016.0838


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 7941.0 8894.0   16 2223.0 1.12 1708.0, 40021.0 -0.66
129S1/SvImJ m 7530.0 1563.0   15 404.0 0.208 4297.0, 10119.0 -0.68
A/J f 2820.0 1353.0   16 338.0 0.48 1047.0, 5176.0 -1.34
A/J m 4418.0 3693.0   16 923.0 0.836 2211.0, 17694.0 -1.1
C57BL/6J f 20987.0 2850.0   16 712.0 0.136 15698.0, 26902.0 1.08
C57BL/6J m 20905.0 4084.0   16 1021.0 0.195 14982.0, 32039.0 1.09
CAST/EiJ f 11322.0 1903.0   19 437.0 0.168 8293.0, 15305.0 -0.21
CAST/EiJ m 10829.0 1643.0   18 387.0 0.152 9000.0, 14494.0 -0.25
NOD/ShiLtJ f 24278.0 5267.0   18 1241.0 0.217 14544.0, 34992.0 1.52
NOD/ShiLtJ m 25733.0 4337.0   16 1084.0 0.169 20042.0, 33274.0 1.73
NZO/HlLtJ f 6295.0 1849.0   17 449.0 0.294 4329.0, 11547.0 -0.88
NZO/HlLtJ m 5519.0 1497.0   17 363.0 0.271 3607.0, 9266.0 -0.95
PWK/PhJ f 11530.0 2462.0   20 550.0 0.214 8303.0, 18466.0 -0.18
PWK/PhJ m 11075.0 2034.0   22 434.0 0.184 7013.0, 16030.0 -0.21
WSB/EiJ f 17870.0 3292.0   18 776.0 0.184 11561.0, 24005.0 0.67
WSB/EiJ m 15538.0 2007.0   15 518.0 0.129 12303.0, 20203.0 0.38


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 7941.125 881.8665 9677.6661 6204.5839
129S1/SvImJ m 7530.1333 910.7878 9323.6253 5736.6414
A/J f 2820.25 881.8665 4556.7911 1083.7089
A/J m 4417.75 881.8665 6154.2911 2681.2089
C57BL/6J f 20986.6 881.8665 22723.1411 19250.0589
C57BL/6J m 20905.4125 881.8665 22641.9536 19168.8714
CAST/EiJ f 11321.9474 809.2562 12915.5068 9728.3879
CAST/EiJ m 10828.75 831.4317 12465.9767 9191.5233
NOD/ShiLtJ f 24277.6167 831.4317 25914.8433 22640.39
NOD/ShiLtJ m 25733.2313 881.8665 27469.7724 23996.6901
NZO/HlLtJ f 6294.5471 855.5362 7979.2394 4609.8547
NZO/HlLtJ m 5518.9235 855.5362 7203.6159 3834.2312
PWK/PhJ f 11529.7 788.7654 13082.9096 9976.4904
PWK/PhJ m 11074.6818 752.0583 12555.6091 9593.7546
WSB/EiJ f 17869.5611 831.4317 19506.7878 16232.3344
WSB/EiJ m 15537.6933 910.7878 17331.1853 13744.2014


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 7735.6292 633.8815 8983.8467 6487.4116
A/J both 3619.0 623.5738 4846.92 2391.08
C57BL/6J both 20946.0063 623.5738 22173.9262 19718.0863
CAST/EiJ both 11075.3487 580.1237 12217.7084 9932.989
NOD/ShiLtJ both 25005.424 606.0048 26198.7477 23812.1002
NZO/HlLtJ both 5906.7353 604.9554 7097.9927 4715.4779
PWK/PhJ both 11302.1909 544.918 12375.2246 10229.1572
WSB/EiJ both 16703.6272 616.6063 17917.827 15489.4274




  GWAS USING LINEAR MIXED MODELS