Project measure / variable:   GMC01   center_distance

ID, description, units MPD:55041   center_distance   distance traveled in center of arena, 20 min test   [cm]  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - distance traveled in center of arena, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means4409   cm 3627   cm
Median of the strain means3086   cm 2900   cm
SD of the strain means± 4917 ± 3743
Coefficient of variation (CV)1.12 1.03
Min–max range of strain means8.94   –   14545   cm 21.8   –   10687   cm
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 59353677.9769 59353677.9769 25.1043 < 0.0001
strain 7 4429248066.9471 632749723.8496 267.6281 < 0.0001
sex:strain 7 103457935.2239 14779705.032 6.2512 < 0.0001
Residuals 259 612350419.0923 2364287.3324


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 445.0 569.0   16 142.0 1.28 -0.81
129S1/SvImJ m 160.0 183.0   15 47.2 1.14 -0.93
A/J f 8.94 17.3   16 4.33 1.94 -0.89
A/J m 21.8 74.7   16 18.7 3.43 -0.96
C57BL/6J f 7184.0 2057.0   16 514.0 0.286 3751.0, 10760.0 0.56
C57BL/6J m 6732.0 1530.0   16 383.0 0.227 4756.0, 9816.0 0.83
CAST/EiJ f 3936.0 900.0   19 206.0 0.229 2166.0, 5541.0 -0.1
CAST/EiJ m 3713.0 1197.0   18 282.0 0.322 2391.0, 6172.0 0.02
NOD/ShiLtJ f 14545.0 3695.0   18 871.0 0.254 9560.0, 20218.0 2.06
NOD/ShiLtJ m 10687.0 2140.0   16 535.0 0.2 5593.0, 13625.0 1.89
NZO/HlLtJ f 545.0 710.0   17 172.0 1.3 -0.79
NZO/HlLtJ m 587.0 618.0   17 150.0 1.05 12.3, 2251.0 -0.81
PWK/PhJ f 2236.0 565.0   20 126.0 0.253 1154.0, 3264.0 -0.44
PWK/PhJ m 2088.0 628.0   22 134.0 0.301 1107.0, 3535.0 -0.41
WSB/EiJ f 6371.0 1877.0   18 442.0 0.295 3163.0, 10366.0 0.4
WSB/EiJ m 5026.0 2394.0   15 618.0 0.476 2258.0, 10132.0 0.37


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 445.1375 384.406 1202.0965 -311.8215
129S1/SvImJ m 159.7467 397.0128 941.5306 -622.0372
A/J f 8.9375 384.406 765.8965 -748.0215
A/J m 21.7875 384.406 778.7465 -735.1715
C57BL/6J f 7184.3063 384.406 7941.2653 6427.3472
C57BL/6J m 6731.6938 384.406 7488.6528 5974.7347
CAST/EiJ f 3936.0474 352.7551 4630.6806 3241.4141
CAST/EiJ m 3713.0556 362.4214 4426.7234 2999.3877
NOD/ShiLtJ f 14545.0611 362.4214 15258.7289 13831.3933
NOD/ShiLtJ m 10686.775 384.406 11443.734 9929.816
NZO/HlLtJ f 544.7412 372.9286 1279.0993 -189.6169
NZO/HlLtJ m 587.4353 372.9286 1321.7934 -146.9228
PWK/PhJ f 2235.825 343.8232 2912.8697 1558.7803
PWK/PhJ m 2088.3955 327.8225 2733.9323 1442.8586
WSB/EiJ f 6371.2611 362.4214 7084.9289 5657.5933
WSB/EiJ m 5026.4933 397.0128 5808.2772 4244.7094


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 302.4421 276.3092 846.5407 -241.6565
A/J both 15.3625 271.8161 550.6134 -519.8884
C57BL/6J both 6958.0 271.8161 7493.2509 6422.7491
CAST/EiJ both 3824.5515 252.8762 4322.5065 3326.5964
NOD/ShiLtJ both 12615.9181 264.1577 13136.0884 12095.7477
NZO/HlLtJ both 566.0882 263.7003 1085.3578 46.8186
PWK/PhJ both 2162.1102 237.53 2629.8461 1694.3744
WSB/EiJ both 5698.8772 268.7789 6228.1474 5169.607




  GWAS USING LINEAR MIXED MODELS