Project measure / variable:   GMC01   whole_rest

ID, description, units MPD:55031   whole_rest   resting time in whole arena, 20 min test   [s]  
Data set, strains GMC01   inbred w/CC8   8 strains     sex: both     age: 8-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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GMC01 - resting time in whole arena, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means110   s 100   s
Median of the strain means109   s 94.8   s
SD of the strain means± 72.4 ± 67.5
Coefficient of variation (CV)0.659 0.673
Min–max range of strain means7.86   –   198   s 9.21   –   209   s
Mean sample size per strain17.5   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5021.5242 5021.5242 3.7107 0.0552
strain 7 1189156.0359 169879.4337 125.5338 < 0.0001
sex:strain 7 23770.1077 3395.7297 2.5093 0.0164
Residuals 259 350493.4197 1353.2564


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 13.5 14.7   16 3.69 1.09 -1.33
129S1/SvImJ m 17.5 14.5   15 3.74 0.827 1.3, 50.9 -1.23
A/J f 7.86 8.7   16 2.18 1.11 0.1, 28.2 -1.41
A/J m 9.21 9.93   16 2.48 1.08 0.2, 37.6 -1.35
C57BL/6J f 114.0 25.5   16 6.38 0.223 75.7, 162.0 0.06
C57BL/6J m 95.8 17.0   16 4.26 0.178 54.7, 132.0 -0.07
CAST/EiJ f 198.0 49.6   19 11.4 0.251 113.0, 290.0 1.22
CAST/EiJ m 149.0 36.0   18 8.49 0.242 79.3, 209.0 0.72
NOD/ShiLtJ f 104.0 31.7   18 7.48 0.306 50.8, 176.0 -0.08
NOD/ShiLtJ m 93.8 26.6   16 6.66 0.284 52.9, 152.0 -0.1
NZO/HlLtJ f 94.0 39.5   17 9.58 0.42 43.7, 179.0 -0.22
NZO/HlLtJ m 81.4 35.6   17 8.63 0.437 22.8, 130.0 -0.28
PWK/PhJ f 194.0 61.5   20 13.7 0.317 85.3, 305.0 1.16
PWK/PhJ m 209.0 56.6   22 12.1 0.271 93.4, 320.0 1.61
WSB/EiJ f 153.0 44.7   18 10.5 0.292 78.6, 236.0 0.6
WSB/EiJ m 146.0 32.8   15 8.48 0.225 82.4, 195.0 0.68


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 13.5438 9.1967 31.6535 -4.566
129S1/SvImJ m 17.5467 9.4983 36.2503 -1.157
A/J f 7.8625 9.1967 25.9722 -10.2472
A/J m 9.2125 9.1967 27.3222 -8.8972
C57BL/6J f 114.375 9.1967 132.4847 96.2653
C57BL/6J m 95.7687 9.1967 113.8785 77.659
CAST/EiJ f 197.7474 8.4394 214.366 181.1287
CAST/EiJ m 149.0111 8.6707 166.0851 131.9371
NOD/ShiLtJ f 103.5944 8.6707 120.6685 86.5204
NOD/ShiLtJ m 93.8 9.1967 111.9097 75.6903
NZO/HlLtJ f 94.0412 8.9221 111.6102 76.4721
NZO/HlLtJ m 81.4471 8.9221 99.0161 63.878
PWK/PhJ f 194.05 8.2257 210.2478 177.8522
PWK/PhJ m 209.2591 7.8429 224.7031 193.8151
WSB/EiJ f 153.1833 8.6707 170.2574 136.1093
WSB/EiJ m 146.0467 9.4983 164.7503 127.343


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 15.5452 6.6105 28.5624 2.528
A/J both 8.5375 6.503 21.343 -4.268
C57BL/6J both 105.0719 6.503 117.8774 92.2664
CAST/EiJ both 173.3792 6.0499 185.2925 161.466
NOD/ShiLtJ both 98.6972 6.3198 111.142 86.2525
NZO/HlLtJ both 87.7441 6.3089 100.1673 75.3209
PWK/PhJ both 201.6545 5.6827 212.8448 190.4643
WSB/EiJ both 149.615 6.4304 162.2774 136.9526




  GWAS USING LINEAR MIXED MODELS