Project measure / variable:   Tarantino1   amb_epi_cocaine

ID, description, units MPD:45917   amb_epi_cocaine   ambulatory episodes, 30 min test   [n]  treated (day 3)  
cocaine study
Data set, strains Tarantino1   inbred   45 strains     sex: m     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Tarantino1 - ambulatory episodes, 30 min test treated (day 3)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested45 strains
Mean of the strain means351   n
Median of the strain means376   n
SD of the strain means± 124
Coefficient of variation (CV)0.353
Min–max range of strain means77.8   –   583   n
Mean sample size per strain18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 44 13002725.6278 295516.4915 14.9075 < 0.0001
Residuals 793 15719955.7257 19823.3994


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 88.2 143.0   20 31.9 1.62 -2.12
A/J m 90.4 120.0   23 25.1 1.33 -2.1
AKR/J m 389.0 133.0   20 29.8 0.343 76.0, 523.0 0.31
BALB/cByJ m 208.0 153.0   18 36.1 0.738 11.0, 498.0 -1.15
BTBR T+ Itpr3tf/J m 215.0 172.0   19 39.6 0.803 7.0, 545.0 -1.1
BUB/BnJ m 429.0 157.0   17 38.0 0.366 51.0, 585.0 0.63
C3H/HeJ m 393.0 118.0   20 26.3 0.299 127.0, 564.0 0.34
C57BL/6J m 453.0 107.0   52 14.9 0.237 175.0, 637.0 0.82
C57BLKS/J m 310.0 164.0   20 36.6 0.529 1.0, 556.0 -0.33
C57BR/cdJ m 328.0 102.0   16 25.4 0.31 121.0, 509.0 -0.19
C57L/J m 458.0 136.0   18 32.1 0.298 202.0, 754.0 0.86
C58/J m 543.0 124.0   16 31.1 0.229 340.0, 709.0 1.55
CBA/J m 380.0 150.0   20 33.5 0.395 49.0, 575.0 0.23
CE/J m 432.0 59.5   18 14.0 0.138 256.0, 511.0 0.65
CZECHII/EiJ m 263.0 130.0   18 30.5 0.492 37.0, 487.0 -0.71
DBA/2J m 284.0 185.0   18 43.7 0.654 -0.54
DDY/JclSidSeyFrkJ m 437.0 127.0   16 31.8 0.291 179.0, 594.0 0.69
FVB/NJ m 264.0 178.0   20 39.7 0.673 11.0, 558.0 -0.7
I/LnJ m 560.0 108.0   15 27.9 0.193 364.0, 696.0 1.68
KK/HlJ m 414.0 132.0   15 34.2 0.32 164.0, 574.0 0.51
LG/J m 77.8 86.9   19 19.9 1.12 -2.2
LP/J m 93.2 92.7   20 20.7 0.995 -2.08
MA/MyJ m 379.0 195.0   16 48.8 0.515 6.0, 651.0 0.23
MOLF/EiJ m 342.0 141.0   16 35.3 0.412 54.0, 527.0 -0.07
MRL/MpJ m 424.0 133.0   19 30.6 0.314 33.0, 598.0 0.59
MSM/MsJ m 376.0 184.0   18 43.4 0.49 26.0, 674.0 0.2
NOD/ShiLtJ m 482.0 91.3   19 20.9 0.189 289.0, 622.0 1.06
NON/ShiLtJ m 443.0 105.0   20 23.4 0.236 246.0, 611.0 0.74
NOR/LtJ m 459.0 162.0   20 36.2 0.353 66.0, 635.0 0.87
NZB/BlNJ m 373.0 135.0   18 31.8 0.362 102.0, 573.0 0.18
NZO/HlLtJ m 217.0 119.0   16 29.7 0.548 58.0, 428.0 -1.08
NZW/LacJ m 244.0 135.0   19 31.0 0.554 4.0, 461.0 -0.86
PERA/EiJ m 236.0 73.1   15 18.9 0.309 135.0, 360.0 -0.93
P/J m 358.0 63.1   12 18.2 0.176 258.0, 458.0 0.06
PL/J m 457.0 99.9   19 22.9 0.219 244.0, 584.0 0.85
PWD/PhJ m 500.0 222.0   15 57.4 0.445 213.0, 910.0 1.2
RIIIS/J m 330.0 123.0   15 31.7 0.371 151.0, 510.0 -0.17
SEA/GnJ m 360.0 228.0   15 58.9 0.634 33.9, 660.0 0.07
SJL/J m 259.0 188.0   24 38.4 0.726 19.0, 668.0 -0.74
SKIVE/EiJ m 583.0 143.0   18 33.7 0.245 315.0, 784.0 1.87
SM/J m 390.0 109.0   19 25.1 0.28 175.0, 547.0 0.31
SWR/J m 470.0 130.0   17 31.5 0.277 200.0, 697.0 0.96
TALLYHO/JngJ m 324.0 157.0   16 39.3 0.485 77.0, 590.0 -0.22
WSB/EiJ m 278.0 222.0   17 53.8 0.797 10.0, 586.0 -0.59
ZALENDE/EiJ m 400.0 104.0   17 25.2 0.26 246.0, 583.0 0.4


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 88.25 31.4829 150.0496 26.4504
A/J m 90.3913 29.3579 148.0197 32.7629
AKR/J m 388.85 31.4829 450.6496 327.0504
BALB/cByJ m 207.7222 33.1858 272.8647 142.5797
BTBR T+ Itpr3tf/J m 214.6842 32.3007 278.0892 151.2792
BUB/BnJ m 428.5294 34.1479 495.5605 361.4984
C3H/HeJ m 392.85 31.4829 454.6496 331.0504
C57BL/6J m 452.5962 19.5248 490.9226 414.2697
C57BLKS/J m 309.55 31.4829 371.3496 247.7504
C57BR/cdJ m 327.875 35.1989 396.969 258.781
C57L/J m 457.7778 33.1858 522.9203 392.6353
C58/J m 543.0 35.1989 612.094 473.906
CBA/J m 379.55 31.4829 441.3496 317.7504
CE/J m 431.9444 33.1858 497.0869 366.802
CZECHII/EiJ m 263.2222 33.1858 328.3647 198.0797
DBA/2J m 283.7222 33.1858 348.8647 218.5797
DDY/JclSidSeyFrkJ m 437.1875 35.1989 506.2815 368.0935
FVB/NJ m 263.9 31.4829 325.6996 202.1004
I/LnJ m 560.1333 36.3533 631.4933 488.7733
KK/HlJ m 413.5333 36.3533 484.8933 342.1733
LG/J m 77.7895 32.3007 141.1945 14.3844
LP/J m 93.15 31.4829 154.9496 31.3504
MA/MyJ m 379.4375 35.1989 448.5315 310.3435
MOLF/EiJ m 342.1875 35.1989 411.2815 273.0935
MRL/MpJ m 423.9474 32.3007 487.3524 360.5423
MSM/MsJ m 375.7222 33.1858 440.8647 310.5797
NOD/ShiLtJ m 482.3684 32.3007 545.7735 418.9634
NON/ShiLtJ m 443.0 31.4829 504.7996 381.2004
NOR/LtJ m 458.95 31.4829 520.7496 397.1504
NZB/BlNJ m 372.5556 33.1858 437.698 307.4131
NZO/HlLtJ m 217.0625 35.1989 286.1565 147.9685
NZW/LacJ m 243.9474 32.3007 307.3524 180.5423
PERA/EiJ m 236.4 36.3533 307.76 165.04
P/J m 358.0833 40.6442 437.8662 278.3004
PL/J m 456.6842 32.3007 520.0892 393.2792
PWD/PhJ m 500.3333 36.3533 571.6933 428.9733
RIIIS/J m 330.4667 36.3533 401.8267 259.1067
SEA/GnJ m 359.8933 36.3533 431.2533 288.5333
SJL/J m 258.875 28.7398 315.29 202.46
SKIVE/EiJ m 583.3889 33.1858 648.5314 518.2464
SM/J m 390.4211 32.3007 453.8261 327.016
SWR/J m 469.8235 34.1479 536.8546 402.7925
TALLYHO/JngJ m 323.875 35.1989 392.969 254.781
WSB/EiJ m 278.2941 34.1479 345.3252 211.2631
ZALENDE/EiJ m 400.1765 34.1479 467.2075 333.1454




  GWAS USING LINEAR MIXED MODELS