Project measure / variable:   Rusyn5   liver_SAM_SAH_hfe

ID, description, units MPD:43040   liver_SAM_SAH_hfe   ratio of liver SAM to SAH (SAM/SAH)   [ratio]  high-fat and ethanol  
high-fat diet and ethanol study
Data set, strains Rusyn5   inbred   14 strains     sex: m     age: 8-14wks
Procedure metabolite quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rusyn5 - ratio of liver SAM to SAH (SAM/SAH) high-fat and ethanol



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested14 strains
Mean of the strain means1.74   ratio
Median of the strain means1.59   ratio
SD of the strain means± 0.366
Coefficient of variation (CV)0.210
Min–max range of strain means1.13   –   2.37   ratio
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 13 5.1493 0.3961 3.091 0.0064
Residuals 27 3.46 0.1281


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.58 0.647   3 0.374 0.41 0.85, 2.09 -0.45
AKR/J m 1.56 0.212   3 0.123 0.136 1.39, 1.8 -0.5
BALB/cByJ m 1.36 0.245   3 0.142 0.18 1.11, 1.6 -1.05
BALB/cJ m 1.57 0.271   3 0.156 0.172 1.26, 1.76 -0.48
BTBR T+ Itpr3tf/J m 1.13 0.184   3 0.106 0.162 0.92, 1.26 -1.68
C3H/HeJ m 1.94 0.618   3 0.357 0.318 1.39, 2.61 0.53
C57BL/10J m 2.21 0.137   3 0.0788 0.0617 2.12, 2.37 1.27
DBA/2J m 1.44 0.293   3 0.169 0.204 1.21, 1.77 -0.83
FVB/NJ m 1.6 0.197   3 0.114 0.123 1.38, 1.76 -0.39
KK/HlJ m 1.53 0.261   3 0.15 0.17 1.28, 1.8 -0.59
MOLF/EiJ m 2.22 0.456   3 0.263 0.206 1.83, 2.72 1.3
NZW/LacJ m 2.37 0.455   3 0.263 0.192 2.06, 2.89 1.71
PWD/PhJ m 2.01 0.0849   2   0.06 0.0422 1.95, 2.07 0.73
WSB/EiJ m 1.9 0.295   3 0.17 0.155 1.56, 2.09 0.43


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.5767 0.2067 2.0007 1.1526
AKR/J m 1.5633 0.2067 1.9874 1.1393
BALB/cByJ m 1.36 0.2067 1.7841 0.9359
BALB/cJ m 1.57 0.2067 1.9941 1.1459
BTBR T+ Itpr3tf/J m 1.13 0.2067 1.5541 0.7059
C3H/HeJ m 1.9433 0.2067 2.3674 1.5193
C57BL/10J m 2.2133 0.2067 2.6374 1.7893
DBA/2J m 1.44 0.2067 1.8641 1.0159
FVB/NJ m 1.6 0.2067 2.0241 1.1759
KK/HlJ m 1.53 0.2067 1.9541 1.1059
MOLF/EiJ m 2.2167 0.2067 2.6407 1.7926
NZW/LacJ m 2.3667 0.2067 2.7907 1.9426
PWD/PhJ m 2.01 0.2531 2.5294 1.4906
WSB/EiJ m 1.9 0.2067 2.3241 1.4759




  GWAS USING LINEAR MIXED MODELS