Project measure / variable:   Rusyn5   inflammation_hfe

ID, description, units MPD:43016   inflammation_hfe   liver inflammation (0-2)   [score]  high-fat and ethanol  
high-fat diet and ethanol study
Data set, strains Rusyn5   inbred   14 strains     sex: m     age: 8-14wks
Procedure histopathology
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rusyn5 - liver inflammation (0-2) high-fat and ethanol



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested14 strains
Mean of the strain means1.04   score
Median of the strain means1.00   score
SD of the strain means± 0.502
Coefficient of variation (CV)0.485
Min–max range of strain means0.500   –   2.00   score
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 13 9.8631 0.7587 11.5874 < 0.0001
Residuals 28 1.8333 0.0655


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.5 0.0   3 0.0 0.0 0.5, 0.5 -1.07
AKR/J m 0.5 0.0   3 0.0 0.0 0.5, 0.5 -1.07
BALB/cByJ m 0.667 0.289   3 0.167 0.433 0.5, 1.0 -0.73
BALB/cJ m 1.0 0.5   3 0.289 0.5 0.5, 1.5 -0.07
BTBR T+ Itpr3tf/J m 0.5 0.0   3 0.0 0.0 0.5, 0.5 -1.07
C3H/HeJ m 0.833 0.289   3 0.167 0.346 0.5, 1.0 -0.4
C57BL/10J m 0.833 0.289   3 0.167 0.346 0.5, 1.0 -0.4
DBA/2J m 1.0 0.0   3 0.0 0.0 1.0, 1.0 -0.07
FVB/NJ m 2.0 0.0   3 0.0 0.0 2.0, 2.0 1.92
KK/HlJ m 1.0 0.0   3 0.0 0.0 1.0, 1.0 -0.07
MOLF/EiJ m 1.83 0.289   3 0.167 0.157 1.5, 2.0 1.58
NZW/LacJ m 1.0 0.0   3 0.0 0.0 1.0, 1.0 -0.07
PWD/PhJ m 1.83 0.289   3 0.167 0.157 1.5, 2.0 1.58
WSB/EiJ m 1.0 0.5   3 0.289 0.5 0.5, 1.5 -0.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.5 0.1477 0.8026 0.1974
AKR/J m 0.5 0.1477 0.8026 0.1974
BALB/cByJ m 0.6667 0.1477 0.9693 0.364
BALB/cJ m 1.0 0.1477 1.3026 0.6974
BTBR T+ Itpr3tf/J m 0.5 0.1477 0.8026 0.1974
C3H/HeJ m 0.8333 0.1477 1.136 0.5307
C57BL/10J m 0.8333 0.1477 1.136 0.5307
DBA/2J m 1.0 0.1477 1.3026 0.6974
FVB/NJ m 2.0 0.1477 2.3026 1.6974
KK/HlJ m 1.0 0.1477 1.3026 0.6974
MOLF/EiJ m 1.8333 0.1477 2.136 1.5307
NZW/LacJ m 1.0 0.1477 1.3026 0.6974
PWD/PhJ m 1.8333 0.1477 2.136 1.5307
WSB/EiJ m 1.0 0.1477 1.3026 0.6974




  GWAS USING LINEAR MIXED MODELS