Phenotype measure:   CGDpheno1   HDLD

ID, description, units MPD:31842   HDLD   HDL cholesterol (plasma HDL)   [mg/dL]
Data set, strains CGDpheno1   inbred w/CC8   72 strains     sex: both     age: 12wks
Procedure lipid profile
Ontology mappings

  STRAIN COMPARISON PLOT
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CGDpheno1 - HDL cholesterol (plasma HDL)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested71 strains72 strains
Mean of the strain means82.3   mg/dL 102   mg/dL
Median of the strain means78.1   mg/dL 92.8   mg/dL
SD of the strain means± 30.1 ± 35.7
Coefficient of variation (CV)0.365 0.351
Min–max range of strain means34.0   –   187   mg/dL 42.4   –   238   mg/dL
Mean sample size per strain7.4   mice 6.7   mice


  STRAIN MEANS (SUBMITTER-ADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 92.6 20.0   8 7.08 0.216 0.34
129S1/SvImJ m 142.0 19.2   6 7.85 0.135 1.14
A/J f 50.6 19.1   5 8.54 0.377 -1.05
A/J m 66.0 19.6   7 7.4 0.297 -1.0
AKR/J f 54.3 19.3   8 6.83 0.356 -0.93
AKR/J m 81.7 20.0   7 7.56 0.245 -0.56
ALR/LtJ f 59.0 19.5   7 7.38 0.331 -0.77
ALR/LtJ m 98.0 19.5   7 7.38 0.199 -0.1
ALS/LtJ f 70.3 18.3   8 6.48 0.261 -0.4
ALS/LtJ m 87.8 18.1   7 6.83 0.206 -0.38
BALB/cByJ f 61.9 20.0   7 7.56 0.324 -0.68
BALB/cByJ m 98.6 20.0   7 7.56 0.203 -0.08
BPH/2J f 59.2 19.6   8 6.94 0.331 -0.77
BPH/2J m 95.8 17.7   7 6.7 0.185 -0.16
BPL/1J f 91.5 18.4   8 6.5 0.201 0.31
BPL/1J m 108.0 17.4   6 7.1 0.162 0.18
BPN/3J f 117.0 17.4   6 7.12 0.149 1.16
BPN/3J m 132.0 18.1   8 6.39 0.137 0.86
BTBR T+ Itpr3tf/J f 78.1 20.6   8 7.3 0.264 -0.14
BTBR T+ Itpr3tf/J m 102.0 19.2   5 8.59 0.188 0.01
BUB/BnJ f 48.5 20.3   9 6.78 0.419 -1.12
BUB/BnJ m 76.6 18.7   4 9.35 0.244 -0.7
C3H/HeJ f 83.5 19.6   7 7.4 0.235 0.04
C3H/HeJ m 127.0 19.7   8 6.97 0.155 0.71
C57BL/6J f 61.5 20.3   108 1.96 0.331 -0.69
C57BL/6J m 78.3 20.2   105 1.97 0.258 -0.65
C57BR/cdJ f 56.9 17.8   8 6.3 0.313 -0.84
C57BR/cdJ m 85.4 17.8   8 6.3 0.209 -0.45
C57L/J f 44.7 20.3   8 7.17 0.454 -1.25
C57L/J m 56.8 19.4   6 7.93 0.342 -1.25
C58/J f 81.7 20.6   8 7.3 0.253 -0.02
C58/J m 84.2 20.2   7 7.63 0.24 -0.49
CALB/RkJ m 67.7 17.5   6 7.16 0.259 -0.95
CAST/EiJ f 72.4 17.5   5 7.83 0.242 -0.33
CAST/EiJ m 42.4 17.6   5 7.85 0.414 -1.66
CBA/CaJ f 129.0 20.0   8 7.08 0.156 1.56
CBA/CaJ m 131.0 18.6   8 6.58 0.143 0.83
CE/J f 61.4 18.7   7 7.06 0.304 -0.69
CE/J m 79.9 18.0   8 6.35 0.225 -0.61
CZECHI/EiJ f 84.8 18.1   7 6.83 0.213 0.08
CZECHI/EiJ m 80.5 17.9   6 7.29 0.222 -0.59
CZECHII/EiJ f 66.5 17.7   7 6.69 0.266 -0.52
CZECHII/EiJ m 70.8 17.5   6 7.14 0.247 -0.86
DBA/1J f 41.9 20.0   8 7.08 0.478 -1.34
DBA/1J m 80.0 18.7   8 6.62 0.234 -0.6
DBA/2J f 63.4 19.0   7 7.18 0.299 -0.63
DBA/2J m 86.4 19.8   9 6.59 0.229 -0.42
DDY/JclSidSeyFrkJ f 97.8 17.8   8 6.31 0.182 0.52
DDY/JclSidSeyFrkJ m 125.0 17.8   7 6.73 0.143 0.66
EL/SuzSeyFrkJ f 78.4 19.0   8 6.7 0.242 -0.13
EL/SuzSeyFrkJ m 85.3 18.7   7 7.06 0.219 -0.45
FVB/NJ f 116.0 19.6   10 6.19 0.169 1.12
FVB/NJ m 152.0 19.2   6 7.85 0.126 1.42
I/LnJ f 34.0 19.3   6 7.87 0.567 -1.61
I/LnJ m 59.8 18.1   5 8.08 0.302 -1.17
JF1/MsJ f 77.6 17.9   8 6.33 0.231 -0.16
JF1/MsJ m 60.8 17.8   6 7.27 0.293 -1.14
KK/HlJ f 143.0 17.9   8 6.33 0.125 2.02
KK/HlJ m 157.0 17.1   3 9.87 0.109 1.56
LEWES/EiJ f 99.1 17.5   6 7.16 0.177 0.56
LEWES/EiJ m 110.0 17.5   5 7.81 0.158 0.24
LG/J f 161.0 19.9   7 7.53 0.123 2.62
LG/J m 164.0 18.5   8 6.54 0.113 1.75
LP/J f 72.1 19.3   8 6.83 0.268 -0.34
LP/J m 74.1 18.4   8 6.49 0.248 -0.77
LT/SvEiJ f 57.3 18.7   8 6.62 0.327 -0.83
LT/SvEiJ m 65.3 18.6   7 7.03 0.285 -1.02
MA/MyJ f 73.1 19.0   8 6.7 0.259 -0.31
MA/MyJ m 103.0 19.0   8 6.7 0.184 0.04
MOLF/EiJ f 49.9 17.6   7 6.66 0.353 -1.08
MOLF/EiJ m 60.7 17.8   6 7.25 0.293 -1.14
MRL/MpJ f 104.0 20.0   9 6.66 0.191 0.72
MRL/MpJ m 153.0 19.4   6 7.93 0.127 1.44
MSM/MsJ f 93.2 18.0   7 6.79 0.193 0.36
MSM/MsJ m 75.2 17.6   4 8.79 0.234 -0.74
NH/KiPtJ f 114.0 17.8   8 6.29 0.156 1.06
NH/KiPtJ m 110.0 17.7   7 6.67 0.16 0.24
NOD/ShiLtJ f 74.0 19.2   6 7.83 0.259 -0.28
NOD/ShiLtJ m 101.0 18.5   6 7.55 0.184 -0.01
NON/ShiLtJ f 78.8 17.9   7 6.76 0.227 -0.12
NON/ShiLtJ m 156.0 19.5   7 7.38 0.125 1.53
NOR/LtJ f 38.9 20.2   8 7.15 0.521 -1.44
NOR/LtJ m 120.0 17.2   2   12.2 0.144 0.52
NZB/BlNJ f 115.0 20.6   8 7.3 0.18 1.09
NZB/BlNJ m 198.0 18.6   7 7.02 0.0939 2.71
NZL/LtJ f 121.0 17.9   8 6.32 0.148 1.29
NZL/LtJ m 157.0 18.0   8 6.36 0.115 1.56
NZM2410/J f 122.0 18.4   7 6.97 0.151 1.32
NZM2410/J m 102.0 18.3   8 6.47 0.18 0.01
NZO/HlLtJ f 132.0 17.8   7 6.72 0.134 1.65
NZO/HlLtJ m 181.0 17.7   8 6.26 0.098 2.23
NZW/LacJ f 138.0 19.6   7 7.42 0.142 1.85
NZW/LacJ m 140.0 18.5   6 7.56 0.132 1.08
PANCEVO/EiJ f 61.5 17.7   5 7.89 0.287 -0.69
PANCEVO/EiJ m 70.7 17.5   6 7.16 0.248 -0.86
PERA/EiJ f 99.2 17.9   8 6.33 0.18 0.56
PERA/EiJ m 79.9 17.7   7 6.68 0.221 -0.61
PERC/EiJ f 92.1 17.8   6 7.28 0.194 0.33
PERC/EiJ m 79.0 17.5   7 6.63 0.222 -0.63
P/J f 77.3 18.3   7 6.9 0.236 -0.17
P/J m 110.0 18.4   6 7.5 0.168 0.24
PL/J f 87.1 19.9   8 7.04 0.229 0.16
PL/J m 119.0 18.4   4 9.18 0.154 0.49
PN/nBSwUmabJ f 49.2 17.8   6 7.28 0.363 -1.1
PN/nBSwUmabJ m 74.7 18.4   8 6.52 0.247 -0.75
PWD/PhJ f 60.2 19.9   8 7.04 0.331 -0.73
PWD/PhJ m 89.9 19.9   8 7.04 0.221 -0.33
PWK/PhJ f 92.6 19.9   7 7.53 0.215 0.34
PWK/PhJ m 73.3 19.9   7 7.53 0.272 -0.79
RBA/DnJ f 98.6 17.7   7 6.69 0.179 0.54
RBA/DnJ m 101.0 17.8   8 6.31 0.177 -0.01
RBF/DnJ f 187.0 19.2   7 7.24 0.103 3.49
RBF/DnJ m 238.0 19.5   8 6.91 0.0821 3.83
RF/J f 84.0 17.9   6 7.29 0.213 0.06
RF/J m 114.0 17.5   8 6.2 0.154 0.35
RIIIS/J f 57.6 17.5   7 6.61 0.303 -0.82
RIIIS/J m 63.2 17.5   7 6.61 0.277 -1.07
SB/LeJ f 76.6 17.6   8 6.21 0.229 -0.19
SB/LeJ m 93.0 17.6   8 6.21 0.189 -0.24
SEA/GnJ f 56.5 17.9   8 6.33 0.317 -0.86
SEA/GnJ m 74.2 17.9   9 5.98 0.242 -0.77
SF/CamEiJ f 87.3 20.1   8 7.12 0.231 0.17
SF/CamEiJ m 107.0 18.2   7 6.89 0.17 0.15
SJL/J f 42.4 20.3   8 7.17 0.479 -1.33
SJL/J m 73.3 18.0   3 10.4 0.246 -0.79
SKIVE/EiJ f 76.4 17.7   7 6.68 0.231 -0.2
SKIVE/EiJ m 92.7 17.9   8 6.33 0.193 -0.25
SM/J f 47.1 20.6   8 7.3 0.439 -1.17
SM/J m 90.3 19.1   6 7.81 0.212 -0.31
SOD1/EiJ f 78.5 19.5   8 6.88 0.248 -0.13
SOD1/EiJ m 71.6 18.6   8 6.57 0.26 -0.84
SPRET/EiJ f 119.0 18.0   8 6.36 0.151 1.22
SPRET/EiJ m 95.5 18.1   8 6.4 0.189 -0.17
SWR/J f 49.7 18.6   7 7.04 0.375 -1.08
SWR/J m 88.7 19.4   8 6.85 0.218 -0.36
TALLYHO/JngJ f 90.2 18.2   6 7.42 0.202 0.26
TALLYHO/JngJ m 133.0 17.8   5 7.97 0.134 0.88
TIRANO/EiJ f 75.0 17.4   6 7.12 0.232 -0.24
TIRANO/EiJ m 88.4 17.5   6 7.16 0.198 -0.37
WSB/EiJ f 78.6 17.7   6 7.24 0.226 -0.12
WSB/EiJ m 93.7 17.5   7 6.6 0.186 -0.22
ZALENDE/EiJ f 96.5 18.1   7 6.83 0.187 0.47
ZALENDE/EiJ m 125.0 17.8   5 7.97 0.143 0.66




  GWAS USING LINEAR MIXED MODELS