Project measure / variable:   Yuan3   Mg_M18

ID, description, units MPD:24433   Mg_M18   magnesium (serum Mg)   [mg/dL]  at age 18mo  
Data set, strains Yuan3   inbred   29 strains     sex: both     age: 78wks
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  STRAIN COMPARISON PLOT
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Yuan3 - magnesium (serum Mg) at age 18mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains24 strains
Mean of the strain means2.58   mg/dL 2.54   mg/dL
Median of the strain means2.48   mg/dL 2.56   mg/dL
SD of the strain means± 0.386 ± 0.288
Coefficient of variation (CV)0.149 0.113
Min–max range of strain means1.97   –   3.67   mg/dL 2.08   –   3.50   mg/dL
Mean sample size per strain6.0   mice 4.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0007 0.0007 0.0117 0.9138
strain 21 23.9429 1.1401 19.9199 < 0.0001
sex:strain 21 1.7235 0.0821 1.4339 0.1054
Residuals 205 11.7335 0.0572


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.74 0.369   7 0.139 0.135 2.3, 3.3 0.42
129S1/SvImJ m 2.8 0.141   4 0.0707 0.0505 2.6, 2.9 0.9
A/J f 2.2 0.153   7 0.0577 0.0694 2.0, 2.5 -0.98
A/J m 2.6 0.283   2   0.2 0.109 2.4, 2.8 0.21
BALB/cByJ f 2.21 0.186   7 0.0705 0.0842 2.0, 2.4 -0.96
BALB/cByJ m 2.25 0.212   2   0.15 0.0943 2.1, 2.4 -1.01
BTBR T+ Itpr3tf/J f 3.04 0.261   5 0.117 0.0858 2.7, 3.3 1.19
BTBR T+ Itpr3tf/J m 2.8 0.316   4 0.158 0.113 2.4, 3.1 0.9
BUB/BnJ f 3.45 0.0707   2   0.05 0.0205 3.4, 3.5 2.26
C3H/HeJ f 2.63 0.115   3 0.0667 0.0438 2.5, 2.7 0.13
C3H/HeJ m 2.47 0.339   6 0.138 0.137 2.1, 3.0 -0.24
C57BL/10J f 2.89 0.212   7 0.08 0.0733 2.7, 3.3 0.81
C57BL/10J m 2.83 0.222   4 0.111 0.0785 2.5, 3.0 1.01
C57BL/6J f 3.67 0.288   6 0.117 0.0784 3.3, 4.1 2.83
C57BL/6J m 3.5 0.1   3 0.0577 0.0286 3.4, 3.6 3.34
C57BLKS/J f 2.54 0.36   7 0.136 0.142 1.9, 2.9 -0.1
C57BLKS/J m 2.51 0.212   7 0.08 0.0841 2.3, 2.9 -0.11
C57BR/cdJ f 2.75 0.193   8 0.0681 0.0701 2.5, 3.0 0.44
C57BR/cdJ m 2.66 0.262   8 0.0925 0.0982 2.4, 3.2 0.42
C57L/J f 2.42 0.149   8 0.0526 0.0614 2.2, 2.6 -0.41
C57L/J m 2.54 0.152   5 0.0678 0.0597 2.4, 2.7 0.0
CBA/J f 2.24 0.272   8 0.0962 0.122 1.9, 2.8 -0.88
CBA/J m 2.08 0.183   6 0.0749 0.0881 1.9, 2.4 -1.6
DBA/2J f 2.52 0.179   5 0.08 0.071 2.4, 2.8 -0.15
DBA/2J m 2.64 0.631   5 0.282 0.239 1.9, 3.3 0.35
FVB/NJ f 2.42 0.0957   4 0.0479 0.0395 2.3, 2.5 -0.41
KK/HlJ f 2.3 0.141   6 0.0577 0.0615 2.1, 2.5 -0.72
LP/J f 2.37 0.151   6 0.0615 0.0636 2.2, 2.5 -0.54
LP/J m 2.58 0.148   5 0.0663 0.0575 2.4, 2.8 0.14
MRL/MpJ f 2.8 0.141   2   0.1 0.0505 2.7, 2.9 0.57
MRL/MpJ m 2.6 0.0   1   0.0 0.0 2.6, 2.6 0.21
NOD.B10Sn-H2b/J f 1.97 0.189   7 0.0714 0.0959 1.7, 2.3 -1.58
NOD.B10Sn-H2b/J m 2.25 0.129   4 0.0645 0.0574 2.1, 2.4 -1.01
NON/ShiLtJ f 2.34 0.215   12 0.0621 0.0919 2.1, 2.8 -0.62
NON/ShiLtJ m 2.33 0.121   6 0.0494 0.0519 2.2, 2.5 -0.73
NZO/HlLtJ f 2.74 0.65   5 0.291 0.237 2.4, 3.9 0.42
NZW/LacJ f 2.2 0.122   5 0.0548 0.0557 2.0, 2.3 -0.98
P/J m 2.42 0.126   4 0.0629 0.0519 2.3, 2.6 -0.42
PL/J f 2.4 0.167   6 0.0683 0.0697 2.2, 2.7 -0.47
PL/J m 2.55 0.1   4 0.05 0.0392 2.5, 2.7 0.03
PWD/PhJ f 2.43 0.151   6 0.0615 0.0619 2.3, 2.7 -0.39
PWD/PhJ m 2.58 0.126   4 0.0629 0.0489 2.4, 2.7 0.14
RIIIS/J f 2.85 0.0707   2   0.05 0.0248 2.8, 2.9 0.7
RIIIS/J m 2.34 0.207   5 0.0927 0.0886 2.1, 2.6 -0.7
SJL/J f 2.34 0.16   8 0.0565 0.0684 2.1, 2.6 -0.62
SJL/J m 2.3 0.2   3 0.115 0.087 2.1, 2.5 -0.84
SM/J f 2.87 0.197   6 0.0803 0.0686 2.7, 3.2 0.75
SM/J m 2.6 0.332   5 0.148 0.128 2.3, 3.1 0.21
SWR/J f 2.74 0.329   8 0.116 0.12 2.1, 3.1 0.42
SWR/J m 2.62 0.303   5 0.136 0.116 2.2, 3.0 0.28
WSB/EiJ f 2.15 0.193   8 0.0681 0.0896 1.9, 2.4 -1.11
WSB/EiJ m 2.12 0.148   5 0.0663 0.07 1.9, 2.3 -1.46


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.7429 0.0904 2.9211 2.5646
129S1/SvImJ m 2.8 0.1196 3.0358 2.5642
A/J f 2.2 0.0904 2.3783 2.0217
A/J m 2.6 0.1692 2.9335 2.2665
BALB/cByJ f 2.2143 0.0904 2.3926 2.036
BALB/cByJ m 2.25 0.1692 2.5835 1.9165
BTBR T+ Itpr3tf/J f 3.04 0.107 3.2509 2.8291
BTBR T+ Itpr3tf/J m 2.8 0.1196 3.0358 2.5642
C3H/HeJ f 2.6333 0.1381 2.9057 2.361
C3H/HeJ m 2.4667 0.0977 2.6592 2.2741
C57BL/10J f 2.8857 0.0904 3.064 2.7074
C57BL/10J m 2.825 0.1196 3.0608 2.5892
C57BL/6J f 3.6667 0.0977 3.8592 3.4741
C57BL/6J m 3.5 0.1381 3.7723 3.2277
C57BLKS/J f 2.5429 0.0904 2.7211 2.3646
C57BLKS/J m 2.5143 0.0904 2.6926 2.336
C57BR/cdJ f 2.75 0.0846 2.9168 2.5832
C57BR/cdJ m 2.6625 0.0846 2.8293 2.4957
C57L/J f 2.425 0.0846 2.5918 2.2582
C57L/J m 2.54 0.107 2.7509 2.3291
CBA/J f 2.2375 0.0846 2.4043 2.0707
CBA/J m 2.0833 0.0977 2.2759 1.8908
DBA/2J f 2.52 0.107 2.7309 2.3091
DBA/2J m 2.64 0.107 2.8509 2.4291
LP/J f 2.3667 0.0977 2.5592 2.1741
LP/J m 2.58 0.107 2.7909 2.3691
NOD.B10Sn-H2b/J f 1.9714 0.0904 2.1497 1.7931
NOD.B10Sn-H2b/J m 2.25 0.1196 2.4858 2.0142
NON/ShiLtJ f 2.3417 0.0691 2.4778 2.2055
NON/ShiLtJ m 2.3333 0.0977 2.5259 2.1408
PL/J f 2.4 0.0977 2.5926 2.2074
PL/J m 2.55 0.1196 2.7858 2.3142
PWD/PhJ f 2.4333 0.0977 2.6259 2.2408
PWD/PhJ m 2.575 0.1196 2.8108 2.3392
RIIIS/J f 2.85 0.1692 3.1835 2.5165
RIIIS/J m 2.34 0.107 2.5509 2.1291
SJL/J f 2.3375 0.0846 2.5043 2.1707
SJL/J m 2.3 0.1381 2.5723 2.0277
SM/J f 2.8667 0.0977 3.0592 2.6741
SM/J m 2.6 0.107 2.8109 2.3891
SWR/J f 2.7375 0.0846 2.9043 2.5707
SWR/J m 2.62 0.107 2.8309 2.4091
WSB/EiJ f 2.15 0.0846 2.3168 1.9832
WSB/EiJ m 2.12 0.107 2.3309 1.9091


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.7714 0.075 2.9193 2.6236
A/J both 2.4 0.0959 2.5891 2.2109
BALB/cByJ both 2.2321 0.0959 2.4212 2.043
BTBR T+ Itpr3tf/J both 2.92 0.0802 3.0782 2.7618
C3H/HeJ both 2.55 0.0846 2.7168 2.3832
C57BL/10J both 2.8554 0.075 3.0032 2.7075
C57BL/6J both 3.5833 0.0846 3.7501 3.4166
C57BLKS/J both 2.5286 0.0639 2.6546 2.4025
C57BR/cdJ both 2.7062 0.0598 2.8242 2.5883
C57L/J both 2.4825 0.0682 2.617 2.348
CBA/J both 2.1604 0.0646 2.2878 2.033
DBA/2J both 2.58 0.0757 2.7292 2.4308
LP/J both 2.4733 0.0724 2.6161 2.3305
NOD.B10Sn-H2b/J both 2.1107 0.075 2.2585 1.9629
NON/ShiLtJ both 2.3375 0.0598 2.4554 2.2196
PL/J both 2.475 0.0772 2.6272 2.3228
PWD/PhJ both 2.5042 0.0772 2.6564 2.3519
RIIIS/J both 2.595 0.1001 2.7923 2.3977
SJL/J both 2.3188 0.081 2.4784 2.1591
SM/J both 2.7333 0.0724 2.8761 2.5905
SWR/J both 2.6787 0.0682 2.8132 2.5443
WSB/EiJ both 2.135 0.0682 2.2695 2.0005




  GWAS USING LINEAR MIXED MODELS