Project measure / variable:   Yuan3   Mg_M12

ID, description, units MPD:24432   Mg_M12   magnesium (serum Mg)   [mg/dL]  at age 12mo  
Data set, strains Yuan3   inbred   31 strains     sex: both     age: 52wks
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  STRAIN COMPARISON PLOT
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Yuan3 - magnesium (serum Mg) at age 12mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains26 strains
Mean of the strain means2.66   mg/dL 2.69   mg/dL
Median of the strain means2.67   mg/dL 2.58   mg/dL
SD of the strain means± 0.341 ± 0.412
Coefficient of variation (CV)0.128 0.153
Min–max range of strain means1.90   –   3.13   mg/dL 2.00   –   3.75   mg/dL
Mean sample size per strain6.1   mice 5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.4651 0.4651 6.3569 0.0124
strain 21 28.5995 1.3619 18.6134 < 0.0001
sex:strain 21 5.4656 0.2603 3.5572 < 0.0001
Residuals 227 16.6088 0.0732


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.91 0.146   8 0.0515 0.0501 2.7, 3.1 0.75
129S1/SvImJ m 2.74 0.177   8 0.0625 0.0646 2.5, 3.0 0.13
A/J f 2.28 0.217   5 0.097 0.0951 2.1, 2.6 -1.1
A/J m 2.52 0.214   16 0.0536 0.0849 2.2, 3.0 -0.41
AKR/J f 3.0 0.141   2   0.1 0.0471 2.9, 3.1 1.01
AKR/J m 2.7 0.265   3 0.153 0.098 2.4, 2.9 0.03
BALB/cByJ f 2.49 0.121   7 0.0459 0.0489 2.3, 2.6 -0.48
BALB/cByJ m 2.46 0.447   7 0.169 0.182 1.9, 3.3 -0.55
BTBR T+ Itpr3tf/J f 2.56 0.25   8 0.0885 0.0977 2.1, 2.8 -0.28
BTBR T+ Itpr3tf/J m 2.61 0.146   7 0.0553 0.056 2.3, 2.7 -0.19
BUB/BnJ f 2.92 0.0957   4 0.0479 0.0327 2.8, 3.0 0.78
BUB/BnJ m 2.56 0.336   5 0.15 0.131 2.2, 3.1 -0.31
C3H/HeJ f 2.3 0.151   8 0.0535 0.0657 2.1, 2.5 -1.04
C3H/HeJ m 2.21 0.219   7 0.0829 0.099 1.9, 2.6 -1.16
C57BL/10J f 2.95 0.281   6 0.115 0.0953 2.4, 3.2 0.86
C57BL/10J m 3.03 0.17   7 0.0644 0.0563 2.8, 3.2 0.83
C57BL/6J f 3.06 0.272   8 0.0962 0.0889 2.6, 3.4 1.19
C57BL/6J m 3.43 0.557   6 0.228 0.162 2.7, 4.3 1.8
C57BLKS/J f 2.6 0.276   6 0.113 0.106 2.3, 3.0 -0.16
C57BLKS/J m 2.94 0.226   8 0.08 0.0771 2.6, 3.3 0.61
C57BR/cdJ f 2.67 0.153   3 0.0882 0.0573 2.5, 2.8 0.04
C57BR/cdJ m 3.75 0.472   8 0.167 0.126 2.9, 4.5 2.58
C57L/J f 2.72 0.0983   6 0.0401 0.0362 2.6, 2.8 0.19
C57L/J m 2.42 0.189   4 0.0946 0.0781 2.3, 2.7 -0.65
CAST/EiJ f 1.9 0.115   7 0.0436 0.0608 1.7, 2.1 -2.21
CBA/J f 2.08 0.0957   4 0.0479 0.0461 2.0, 2.2 -1.69
CBA/J m 2.48 0.695   4 0.347 0.281 2.0, 3.5 -0.5
DBA/2J f 2.53 0.503   3 0.291 0.199 2.0, 3.0 -0.37
DBA/2J m 2.3 0.292   5 0.13 0.127 2.1, 2.8 -0.94
FVB/NJ f 2.98 0.324   8 0.115 0.109 2.5, 3.6 0.95
FVB/NJ m 2.0 0.0   1   0.0 0.0 2.0, 2.0 -1.67
KK/HlJ f 2.7 0.393   8 0.139 0.145 2.2, 3.2 0.13
LP/J f 3.0 0.283   6 0.115 0.0943 2.7, 3.5 1.01
MRL/MpJ m 3.29 0.485   7 0.183 0.147 2.7, 4.2 1.46
NOD.B10Sn-H2b/J f 2.2 0.2   6 0.0816 0.0909 2.1, 2.6 -1.34
NOD.B10Sn-H2b/J m 2.38 0.228   5 0.102 0.0958 2.1, 2.7 -0.75
NON/ShiLtJ f 2.99 0.398   7 0.15 0.133 2.4, 3.4 0.98
NON/ShiLtJ m 2.88 0.37   5 0.166 0.129 2.6, 3.5 0.47
NZO/HlLtJ m 2.58 0.512   5 0.229 0.198 2.1, 3.4 -0.26
NZW/LacJ f 2.66 0.151   7 0.0571 0.0569 2.5, 2.9 0.01
NZW/LacJ m 2.54 0.336   5 0.15 0.132 2.1, 3.0 -0.36
P/J f 3.13 0.207   6 0.0843 0.0659 2.9, 3.4 1.39
PL/J m 2.35 0.212   2   0.15 0.0903 2.2, 2.5 -0.82
PWD/PhJ f 2.2 0.0926   8 0.0327 0.0421 2.1, 2.4 -1.34
PWD/PhJ m 2.32 0.183   6 0.0749 0.0792 2.1, 2.6 -0.89
RIIIS/J f 3.02 0.191   8 0.0675 0.0631 2.9, 3.4 1.07
RIIIS/J m 2.8 0.293   8 0.104 0.105 2.5, 3.2 0.27
SJL/J f 2.38 0.205   5 0.0917 0.0861 2.2, 2.7 -0.81
SJL/J m 2.6 0.183   4 0.0913 0.0702 2.4, 2.8 -0.21
SM/J f 2.67 0.125   7 0.0474 0.0469 2.5, 2.8 0.04
SM/J m 2.59 0.227   7 0.0857 0.0877 2.3, 2.9 -0.24
SWR/J f 3.05 0.342   4 0.171 0.112 2.6, 3.4 1.16
SWR/J m 3.4 0.268   6 0.11 0.0789 3.1, 3.8 1.73
WSB/EiJ f 2.4 0.231   4 0.115 0.0962 2.2, 2.6 -0.75


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.9125 0.0956 3.1009 2.7241
129S1/SvImJ m 2.7375 0.0956 2.9259 2.5491
A/J f 2.28 0.121 2.5184 2.0416
A/J m 2.525 0.0676 2.6582 2.3918
AKR/J f 3.0 0.1913 3.3769 2.6231
AKR/J m 2.7 0.1562 3.0077 2.3923
BALB/cByJ f 2.4857 0.1022 2.6872 2.2843
BALB/cByJ m 2.4571 0.1022 2.6586 2.2557
BTBR T+ Itpr3tf/J f 2.5625 0.0956 2.7509 2.3741
BTBR T+ Itpr3tf/J m 2.6143 0.1022 2.8157 2.4128
BUB/BnJ f 2.925 0.1352 3.1915 2.6585
BUB/BnJ m 2.56 0.121 2.7984 2.3216
C3H/HeJ f 2.3 0.0956 2.4884 2.1116
C3H/HeJ m 2.2143 0.1022 2.4157 2.0128
C57BL/10J f 2.95 0.1104 3.1676 2.7324
C57BL/10J m 3.0286 0.1022 3.23 2.8271
C57BL/6J f 3.0625 0.0956 3.2509 2.8741
C57BL/6J m 3.4333 0.1104 3.6509 3.2157
C57BLKS/J f 2.6 0.1104 2.8176 2.3824
C57BLKS/J m 2.9375 0.0956 3.1259 2.7491
C57BR/cdJ f 2.6667 0.1562 2.9744 2.3589
C57BR/cdJ m 3.75 0.0956 3.9384 3.5616
C57L/J f 2.7167 0.1104 2.9343 2.4991
C57L/J m 2.425 0.1352 2.6915 2.1585
CBA/J f 2.075 0.1352 2.3415 1.8085
CBA/J m 2.475 0.1352 2.7415 2.2085
DBA/2J f 2.5333 0.1562 2.8411 2.2256
DBA/2J m 2.3 0.121 2.5384 2.0616
NOD.B10Sn-H2b/J f 2.2 0.1104 2.4176 1.9824
NOD.B10Sn-H2b/J m 2.38 0.121 2.6184 2.1416
NON/ShiLtJ f 2.9857 0.1022 3.1872 2.7843
NON/ShiLtJ m 2.88 0.121 3.1184 2.6416
NZW/LacJ f 2.6571 0.1022 2.8586 2.4557
NZW/LacJ m 2.54 0.121 2.7784 2.3016
PWD/PhJ f 2.2 0.0956 2.3884 2.0116
PWD/PhJ m 2.3167 0.1104 2.5343 2.0991
RIIIS/J f 3.025 0.0956 3.2134 2.8366
RIIIS/J m 2.8 0.0956 2.9884 2.6116
SJL/J f 2.38 0.121 2.6184 2.1416
SJL/J m 2.6 0.1352 2.8665 2.3335
SM/J f 2.6714 0.1022 2.8729 2.47
SM/J m 2.5857 0.1022 2.7872 2.3843
SWR/J f 3.05 0.1352 3.3165 2.7835
SWR/J m 3.4 0.1104 3.6176 3.1824


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.825 0.0676 2.9582 2.6918
A/J both 2.4025 0.0693 2.539 2.266
AKR/J both 2.85 0.1235 3.0933 2.6067
BALB/cByJ both 2.4714 0.0723 2.6139 2.329
BTBR T+ Itpr3tf/J both 2.5884 0.07 2.7263 2.4505
BUB/BnJ both 2.7425 0.0907 2.9213 2.5637
C3H/HeJ both 2.2571 0.07 2.3951 2.1192
C57BL/10J both 2.9893 0.0752 3.1376 2.841
C57BL/6J both 3.2479 0.073 3.3918 3.104
C57BLKS/J both 2.7688 0.073 2.9127 2.6248
C57BR/cdJ both 3.2083 0.0916 3.3888 3.0279
C57L/J both 2.5708 0.0873 2.7429 2.3988
CBA/J both 2.275 0.0956 2.4634 2.0866
DBA/2J both 2.4167 0.0988 2.6113 2.222
NOD.B10Sn-H2b/J both 2.29 0.0819 2.4514 2.1286
NON/ShiLtJ both 2.9329 0.0792 3.0889 2.7768
NZW/LacJ both 2.5986 0.0792 2.7546 2.4425
PWD/PhJ both 2.2583 0.073 2.4023 2.1144
RIIIS/J both 2.9125 0.0676 3.0457 2.7793
SJL/J both 2.49 0.0907 2.6688 2.3112
SM/J both 2.6286 0.0723 2.771 2.4861
SWR/J both 3.225 0.0873 3.397 3.053




  GWAS USING LINEAR MIXED MODELS