Phenotype measure:   Yuan3   Cl_M06

ID, description, units MPD:24421   Cl_M06   chloride (serum Cl)   [mmol/L]  at age 6mo
Data set, strains Yuan3   inbred   28 strains     sex: both     age: 26wks
Procedure metabolic panel
Ontology mappings

  STRAIN COMPARISON PLOT
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Yuan3 - chloride (serum Cl) at age 6mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains25 strains
Mean of the strain means116   mmol/L 116   mmol/L
Median of the strain means116   mmol/L 116   mmol/L
SD of the strain means± 3.59 ± 4.53
Coefficient of variation (CV)0.0309 0.0391
Min–max range of strain means105   –   123   mmol/L 105   –   123   mmol/L
Mean sample size per strain7.8   mice 7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 8.0602 8.0602 0.8416 0.3596
strain 22 2555.1137 116.1415 12.1273 < 0.0001
sex:strain 22 2112.3694 96.0168 10.0259 < 0.0001
Residuals 315 3016.7171 9.5769


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 116.0 1.55   6 0.632 0.0134 114.0, 118.0 -0.12
129S1/SvImJ m 118.0 2.93   8 1.04 0.0249 114.0, 123.0 0.47
A/J f 115.0 3.77   16 0.944 0.0328 110.0, 125.0 -0.4
A/J m 119.0 2.62   8 0.926 0.022 114.0, 123.0 0.69
BALB/cByJ f 123.0 5.53   8 1.95 0.0451 116.0, 133.0 1.83
BALB/cByJ m 119.0 0.916   8 0.324 0.00772 118.0, 120.0 0.69
BTBR T+ Itpr3tf/J f 118.0 1.71   4 0.854 0.0145 116.0, 120.0 0.44
BTBR T+ Itpr3tf/J m 121.0 2.51   8 0.886 0.0207 117.0, 125.0 1.13
BUB/BnJ f 116.0 3.39   6 1.38 0.0294 110.0, 120.0 -0.12
BUB/BnJ m 115.0 2.07   6 0.843 0.018 112.0, 118.0 -0.19
C3H/HeJ f 120.0 3.18   7 1.2 0.0266 115.0, 124.0 0.99
C3H/HeJ m 123.0 2.37   7 0.896 0.0192 119.0, 126.0 1.57
C57BL/10J f 114.0 2.0   8 0.707 0.0175 112.0, 117.0 -0.68
C57BL/10J m 114.0 2.2   8 0.779 0.0192 112.0, 119.0 -0.41
C57BL/6J f 121.0 3.49   8 1.24 0.0289 116.0, 126.0 1.27
C57BL/6J m 111.0 6.22   4 3.11 0.056 102.0, 116.0 -1.08
C57BLKS/J f 116.0 1.6   8 0.565 0.0137 114.0, 118.0 -0.12
C57BLKS/J m 117.0 2.95   8 1.04 0.0252 112.0, 121.0 0.25
C57BR/cdJ m 118.0 1.71   4 0.854 0.0144 116.0, 120.0 0.47
C57L/J f 117.0 1.25   8 0.441 0.0106 115.0, 119.0 0.16
C57L/J m 116.0 1.96   8 0.693 0.0169 113.0, 119.0 0.03
CAST/EiJ f 113.0 4.27   4 2.14 0.0379 110.0, 119.0 -0.95
CBA/J f 120.0 1.96   8 0.693 0.0163 118.0, 123.0 0.99
DBA/2J f 113.0 4.16   8 1.47 0.0368 106.0, 119.0 -0.95
DBA/2J m 118.0 3.29   16 0.823 0.0279 112.0, 122.0 0.47
FVB/NJ f 115.0 2.93   14 0.783 0.0255 109.0, 120.0 -0.4
FVB/NJ m 115.0 1.54   9 0.512 0.0133 113.0, 117.0 -0.19
KK/HlJ f 115.0 3.44   8 1.22 0.03 109.0, 119.0 -0.4
LP/J f 120.0 2.45   8 0.866 0.0204 115.0, 122.0 0.99
LP/J m 110.0 2.0   8 0.706 0.0181 107.0, 113.0 -1.3
MOLF/EiJ f 105.0 1.41   2   1.0 0.0135 104.0, 106.0 -3.18
MOLF/EiJ m 105.0 2.28   5 1.02 0.0218 102.0, 108.0 -2.4
MRL/MpJ m 111.0 1.46   8 0.515 0.0131 109.0, 114.0 -1.08
NOD.B10Sn-H2b/J f 118.0 4.74   9 1.58 0.0401 112.0, 125.0 0.44
NOD.B10Sn-H2b/J m 115.0 1.68   7 0.634 0.0146 112.0, 117.0 -0.19
NON/ShiLtJ f 115.0 2.33   8 0.822 0.0202 113.0, 119.0 -0.4
NON/ShiLtJ m 123.0 1.89   7 0.714 0.0154 120.0, 126.0 1.57
NZO/HlLtJ f 116.0 1.81   8 0.639 0.0156 113.0, 118.0 -0.12
NZO/HlLtJ m 115.0 4.17   6 1.7 0.0362 110.0, 121.0 -0.19
NZW/LacJ f 119.0 3.34   8 1.18 0.0279 113.0, 123.0 0.72
P/J f 118.0 7.24   8 2.56 0.0614 107.0, 125.0 0.44
P/J m 108.0 1.58   8 0.559 0.0146 106.0, 111.0 -1.74
PL/J f 114.0 2.27   11 0.685 0.02 110.0, 117.0 -0.68
PL/J m 114.0 3.2   9 1.07 0.0282 106.0, 117.0 -0.41
PWD/PhJ f 122.0 3.42   8 1.21 0.0281 116.0, 127.0 1.55
PWD/PhJ m 114.0 2.14   7 0.808 0.0188 111.0, 117.0 -0.41
RIIIS/J f 113.0 3.39   7 1.28 0.0299 106.0, 116.0 -0.95
RIIIS/J m 120.0 2.51   8 0.886 0.0208 115.0, 123.0 0.91
SJL/J f 118.0 1.73   8 0.611 0.0147 115.0, 121.0 0.44
SM/J f 113.0 2.93   8 1.04 0.0259 108.0, 117.0 -0.95
SM/J m 116.0 4.32   6 1.77 0.0374 108.0, 119.0 0.03
WSB/EiJ f 117.0 3.42   8 1.21 0.0291 113.0, 123.0 0.16
WSB/EiJ m 122.0 1.38   6 0.563 0.0113 120.0, 124.0 1.35


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 116.0 1.2634 118.4857 113.5143
129S1/SvImJ m 117.5 1.0941 119.6527 115.3473
A/J f 115.125 0.7737 116.6472 113.6028
A/J m 119.0 1.0941 121.1527 116.8473
BALB/cByJ f 122.625 1.0941 124.7777 120.4723
BALB/cByJ m 118.625 1.0941 120.7777 116.4723
BTBR T+ Itpr3tf/J f 117.75 1.5473 120.7944 114.7056
BTBR T+ Itpr3tf/J m 121.0 1.0941 123.1527 118.8473
BUB/BnJ f 115.5 1.2634 117.9857 113.0143
BUB/BnJ m 114.6667 1.2634 117.1524 112.1809
C3H/HeJ f 119.8571 1.1697 122.1585 117.5558
C3H/HeJ m 123.4286 1.1697 125.7299 121.1272
C57BL/10J f 114.5 1.0941 116.6527 112.3473
C57BL/10J m 114.5 1.0941 116.6527 112.3473
C57BL/6J f 120.75 1.0941 122.9027 118.5973
C57BL/6J m 111.0 1.5473 114.0444 107.9556
C57BLKS/J f 116.375 1.0941 118.5277 114.2223
C57BLKS/J m 116.875 1.0941 119.0277 114.7223
C57L/J f 117.125 1.0941 119.2777 114.9723
C57L/J m 115.875 1.0941 118.0277 113.7223
DBA/2J f 112.875 1.0941 115.0277 110.7223
DBA/2J m 117.8125 0.7737 119.3347 116.2903
FVB/NJ f 114.8571 0.8271 116.4844 113.2298
FVB/NJ m 115.1111 1.0316 117.1407 113.0815
LP/J f 120.0 1.0941 122.1527 117.8473
LP/J m 110.375 1.0941 112.5277 108.2223
MOLF/EiJ f 105.0 2.1883 109.3054 100.6946
MOLF/EiJ m 104.8 1.384 107.523 102.077
NOD.B10Sn-H2b/J f 118.2222 1.0316 120.2518 116.1926
NOD.B10Sn-H2b/J m 115.1429 1.1697 117.4442 112.8415
NON/ShiLtJ f 115.375 1.0941 117.5277 113.2223
NON/ShiLtJ m 122.7143 1.1697 125.0156 120.4129
NZO/HlLtJ f 116.125 1.0941 118.2777 113.9723
NZO/HlLtJ m 115.1667 1.2634 117.6524 112.6809
P/J f 117.875 1.0941 120.0277 115.7223
P/J m 108.25 1.0941 110.4027 106.0973
PL/J f 113.8182 0.9331 115.654 111.9823
PL/J m 113.6667 1.0316 115.6963 111.6371
PWD/PhJ f 121.625 1.0941 123.7777 119.4723
PWD/PhJ m 113.7143 1.1697 116.0156 111.4129
RIIIS/J f 113.1429 1.1697 115.4442 110.8415
RIIIS/J m 120.5 1.0941 122.6527 118.3473
SM/J f 113.0 1.0941 115.1527 110.8473
SM/J m 115.5 1.2634 117.9857 113.0143
WSB/EiJ f 117.375 1.0941 119.5277 115.2223
WSB/EiJ m 121.5 1.2634 123.9857 119.0143


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 116.75 0.8357 118.3942 115.1058
A/J both 117.0625 0.67 118.3808 115.7442
BALB/cByJ both 120.625 0.7737 122.1472 119.1028
BTBR T+ Itpr3tf/J both 119.375 0.9475 121.2393 117.5107
BUB/BnJ both 115.0833 0.8933 116.841 113.3256
C3H/HeJ both 121.6429 0.8271 123.2702 120.0156
C57BL/10J both 114.5 0.7737 116.0222 112.9778
C57BL/6J both 115.875 0.9475 117.7393 114.0107
C57BLKS/J both 116.625 0.7737 118.1472 115.1028
C57L/J both 116.5 0.7737 118.0222 114.9778
DBA/2J both 115.3437 0.67 116.662 114.0255
FVB/NJ both 114.9841 0.6611 116.2848 113.6834
LP/J both 115.1875 0.7737 116.7097 113.6653
MOLF/EiJ both 104.9 1.2946 107.4471 102.3529
NOD.B10Sn-H2b/J both 116.6825 0.7798 118.2168 115.1483
NON/ShiLtJ both 119.0446 0.8008 120.6203 117.469
NZO/HlLtJ both 115.6458 0.8357 117.29 114.0017
P/J both 113.0625 0.7737 114.5847 111.5403
PL/J both 113.7424 0.6955 115.1108 112.3741
PWD/PhJ both 117.6696 0.8008 119.2453 116.094
RIIIS/J both 116.8214 0.8008 118.3971 115.2458
SM/J both 114.25 0.8357 115.8942 112.6058
WSB/EiJ both 119.4375 0.8357 121.0817 117.7933




  GWAS USING LINEAR MIXED MODELS