MPD: Phenotype measures mapped to VT:0015066, surface structure morphology trait

Phenotype measures in JaxKOMP-EAP associated with ontology term
VT:0015066 'surface structure morphology trait'

All measures in this list are mapped to the ontology descendants of VT:0015066. None are mapped to VT:0015066 directly.

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
JaxKOMP-EAP:47	JaxKOMP-EAP	observation (SHIRPA)	(none)	tail length tail_length 100341 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:48	JaxKOMP-EAP	observation (SHIRPA)	(none)	tail thickness tail_thickness 100342 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:49	JaxKOMP-EAP	observation (SHIRPA)	(none)	tail morphology tail_morphology 100343 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:50	JaxKOMP-EAP	observation (SHIRPA)	(none)	tail curvature tail_curvature 100344 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:51	JaxKOMP-EAP	observation (SHIRPA)	(none)	tail shape tail_shape 100345 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:65	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimbs position forelimbs_position 100359 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:66	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimbs size forelimbs_size 100360 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:67	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimb footpads forelimb_footpads 100361 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:68	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimbs position hindlimbs_position 100362 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:69	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimbs shape hindlimbs_shape 100363 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:70	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimbs footpads hindlimbs_footpad 100364 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:71	JaxKOMP-EAP	observation (SHIRPA)	(none)	vibrissae presence vibrissae_presence 100365 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:72	JaxKOMP-EAP	observation (SHIRPA)	(none)	vibrissae appearance vibrissae_appearance 100366 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:75	JaxKOMP-EAP	observation (SHIRPA)	(none)	eye morphology eyes 100369 categorical	KOMP		both	9wks		2021

JaxKOMP-EAP:76	JaxKOMP-EAP	observation (SHIRPA)	(none)	ear morphology ears 100370 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:77	JaxKOMP-EAP	observation (SHIRPA)	(none)	snout size snout_size 100371 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:79	JaxKOMP-EAP	observation (SHIRPA)	(none)	forepaw size forepaw_size 100373 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:80	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindpaw size hindpaw_size 100374 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:81	JaxKOMP-EAP	observation (SHIRPA)	(none)	forepaw shape forepaw_shape 100375 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:82	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindpaw shape hindpaw_shape 100376 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:83	JaxKOMP-EAP	observation (SHIRPA)	(none)	forepaw position forepaw_position 100377 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:84	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindpaw position hindpaw_position 100378 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:85	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimb digit number forelimb_digit_num forelimb_digit_number 100379 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:86	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimb digit number hindlimb_digit_num hindlimb_digit_number 100380 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:87	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimb digit size forelimb_digit_size 100381 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:88	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimb digit size hindlimb_digit_size 100382 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:89	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimb digit shape forelimb_digit_shape 100383 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:90	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimb digit shape hindlimb_digit_shape 100384 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:91	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimb digit position forelimb_digit_position 100385 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:92	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimb nail number forelimb_nail_num forelimb_nail_number 100386 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:93	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimb nail number hindlimb_nail_num hindlimb_nail_number 100387 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:94	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimb nail length forelimb_nail_length 100388 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:95	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimb nail length hindlimb_nail_length 100389 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:96	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimb nail shape forelimb_nail_shape 100390 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:97	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimb nail shape hindlimb_nail_shape 100391 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:98	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimb digit position hindlimb_digit_position 100392 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:99	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimb nail position forelimb_nail_position 100393 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:100	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimb nail position hindlimb_nail_position 100394 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:101	JaxKOMP-EAP	observation (SHIRPA)	(none)	skin color whole body skin_color_whole_body 100395 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:102	JaxKOMP-EAP	observation (SHIRPA)	(none)	skin color snout skin_color_snout 100396 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:103	JaxKOMP-EAP	observation (SHIRPA)	(none)	skin color ear skin_color_ear 100397 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:104	JaxKOMP-EAP	observation (SHIRPA)	(none)	skin color front paws skin_color_front_paws 100398 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:105	JaxKOMP-EAP	observation (SHIRPA)	(none)	skin color back paws skin_color_back_paws 100399 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:106	JaxKOMP-EAP	observation (SHIRPA)	(none)	skin color tail skin_color_tail 100400 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:107	JaxKOMP-EAP	observation (SHIRPA)	(none)	skin texture whole body skin_texture_whole_body 100401 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:108	JaxKOMP-EAP	observation (SHIRPA)	(none)	skin texture snout skin_texture_snout 100402 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:109	JaxKOMP-EAP	observation (SHIRPA)	(none)	skin texture ear skin_texture_ear 100403 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:110	JaxKOMP-EAP	observation (SHIRPA)	(none)	skin texture front paws skin_texture_front_paws 100404 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:111	JaxKOMP-EAP	observation (SHIRPA)	(none)	skin texture back paw skin_texture_back_paws skin_texture_back_paw 100405 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:112	JaxKOMP-EAP	observation (SHIRPA)	(none)	skin texture tail skin_texture_tail 100406 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:123	JaxKOMP-EAP	observation (SHIRPA)	(none)	forelimbs shape forelimbs_shape 100417 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:124	JaxKOMP-EAP	observation (SHIRPA)	(none)	hindlimbs size hindlimbs_size 100418 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:275	JaxKOMP-EAP	ophthalmoscopy	(none)	eyes (present, absent) eye 100600 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:276	JaxKOMP-EAP	ophthalmoscopy	(none)	bulging eye bulging_eye 100601 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:277	JaxKOMP-EAP	ophthalmoscopy	(none)	eye hemorrhage or blood presence eye_hemorrhage eye_hemorrhage_or_blood_presence 100602 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:278	JaxKOMP-EAP	ophthalmoscopy	(none)	eyelid morphology eyelid_morphology 100603 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:279	JaxKOMP-EAP	ophthalmoscopy	(none)	eye closure eye_closure 100604 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:280	JaxKOMP-EAP	ophthalmoscopy	(none)	narrow eye opening narrow_eye_opening 100605 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:283	JaxKOMP-EAP	ophthalmoscopy	(none)	pupil position pupil_position 100608 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:284	JaxKOMP-EAP	ophthalmoscopy	(none)	pupil shape pupil_shape 100609 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:285	JaxKOMP-EAP	ophthalmoscopy	(none)	pupil dilation pupil_dilation 100610 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:287	JaxKOMP-EAP	ophthalmoscopy	(none)	iris pigmentation iris_pigmentation 100612 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:288	JaxKOMP-EAP	slit lamp	(none)	lens lens 100613 categorical	KOMP	2018	both	14wks		2021

JaxKOMP-EAP:289	JaxKOMP-EAP	slit lamp	(none)	lens opacity lens_opacity 100614 categorical	KOMP	2024	both	14wks		2021

JaxKOMP-EAP:291	JaxKOMP-EAP	slit lamp	(none)	synechia synechia 100616 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:292	JaxKOMP-EAP	ophthalmoscopy	(none)	retina retina 100617 categorical	KOMP	2013	both	14wks		2021

JaxKOMP-EAP:293	JaxKOMP-EAP	ophthalmoscopy	(none)	retinal pigmentation retinal_pigmentation 100618 categorical	KOMP	2010	both	14wks		2021

JaxKOMP-EAP:294	JaxKOMP-EAP	ophthalmoscopy	(none)	retinal structure retinal_structure 100619 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:295	JaxKOMP-EAP	ophthalmoscopy	(none)	optic disc optic_disc 100620 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:296	JaxKOMP-EAP	ophthalmoscopy	(none)	retinal blood vessels retinal_blood_vessels 100621 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:298	JaxKOMP-EAP	ophthalmoscopy	(none)	retinal blood vessels pattern retinal_blood_vessels_pattern 100623 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:299	JaxKOMP-EAP	ophthalmoscopy	(none)	retinal blood vessels structure retinal_blood_vessels_structure 100625 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:300	JaxKOMP-EAP	slit lamp	(none)	cornea opacity cornea_opacity 100627 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:301	JaxKOMP-EAP	slit lamp	(none)	cornea vascularization cornea_vascularization 100628 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:302	JaxKOMP-EAP	slit lamp	(none)	corneal scleralization corneal_scleralization 100629 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:303	JaxKOMP-EAP	slit lamp	(none)	corneal deposits corneal_deposits 100630 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:304	JaxKOMP-EAP	slit lamp	(none)	iris transillumination iris_transillumination 100631 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:305	JaxKOMP-EAP	slit lamp	(none)	vitreous vitreous 100632 categorical	KOMP	2025	both	14wks		2021

JaxKOMP-EAP:306	JaxKOMP-EAP	slit lamp	(none)	corneal mineralization corneal_mineralization 100633 categorical	KOMP	2013	both	14wks		2021

JaxKOMP-EAP:307	JaxKOMP-EAP	slit lamp	(none)	corneal ulcer corneal_ulcer 100634 categorical	KOMP	2013	both	14wks		2021

JaxKOMP-EAP:309	JaxKOMP-EAP	slit lamp	(none)	anterior chamber depth anterior_chamber_depth 100636 categorical	KOMP	1987	both	14wks		2021

JaxKOMP-EAP:311	JaxKOMP-EAP	X-ray	(none)	brachydactyly brachydactyly 100639 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:314	JaxKOMP-EAP	X-ray	(none)	digit integrity digit_integrity 100644 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:327	JaxKOMP-EAP	X-ray	(none)	number of digits digits_num number_of_digits 100659	KOMP	753	both	14wks	N=4	2017

JaxKOMP-EAP:334	JaxKOMP-EAP	X-ray	(none)	polysyndactylism polysyndactylism 100666 categorical	KOMP	18	both	14wks		2017

JaxKOMP-EAP:336	JaxKOMP-EAP	X-ray	(none)	radius radius 100668 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:343	JaxKOMP-EAP	X-ray	(none)	syndactylism syndactylism 100677 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:345	JaxKOMP-EAP	X-ray	(none)	tibia tibia 100680 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:347	JaxKOMP-EAP	X-ray	(none)	ulna ulna 100683 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:348	JaxKOMP-EAP	X-ray	(none)	zygomatic bone zygomatic_bone 100684 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:364	JaxKOMP-EAP	electroretinography	(none)	b-wave amplitude of cone photoreceptors [µV] cone_b_amplitude cone_b_wave_amplitude 100314 left right	KOMP	351	both	16wks	N=3	2016

JaxKOMP-EAP:366	JaxKOMP-EAP	electroretinography	(none)	b-wave implicit time of rod photoreceptors (interval from onset of stimulus to peak of the wave) [ms] cone_b_time cone_b_wave_implicit_time 100316 left right	KOMP	338	both	16wks	N=3	2016

JaxKOMP-EAP:368	JaxKOMP-EAP	electroretinography	(none)	a-wave amplitude of rod photoreceptors [µV] rod_a_amplitude rod_a_wave_amplitude 100318 left right	KOMP	356	both	16wks	N=3	2016

JaxKOMP-EAP:370	JaxKOMP-EAP	electroretinography	(none)	rod a wave implicit time rod_a_time rod_a_wave_implicit_time 100320 left right	KOMP	330	both	16wks	N=3	2016

JaxKOMP-EAP:372	JaxKOMP-EAP	electroretinography	(none)	b-wave amplitude of rod photoreceptors [µV] rod_b_amplitude rod_b_wave_amplitude 100322 left right	KOMP	357	both	16wks	N=3	2016

JaxKOMP-EAP:374	JaxKOMP-EAP	electroretinography	(none)	rod b wave implicit time rod_b_time rod_b_wave_implicit_time 100324 left right	KOMP	346	both	16wks	N=3	2016

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