MPD: Phenotype measures mapped to MA:0000396, male reproductive system

Phenotype measures in Shorter8 associated with ontology term
MA:0000396 'male reproductive system'

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All measures in this list are mapped to the ontology descendants of MA:0000396. None are mapped to MA:0000396 directly.

MA:0000397 epididymis
MA:0000410 seminal vesicle
MA:0000411 testis
MA:0000413 vas deferens
MA:0002765 male germ cell

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	Sex	Age	Sample Size (Avg)	Year
Shorter8:3	Shorter8	organ weights	(none)	testis weight [g] testis 110158 left right	DO population	m	12-15wks	N=150	2019

Shorter8:5	Shorter8	organ weights	(none)	testis weight mean [g] testis_mean 110160	DO population	m	12-15wks	N=150	2019

Shorter8:6	Shorter8	organ weights	(none)	testis weight as percentage of body weight [%] testis_pct_bw 110161	DO population	m	12-15wks	N=150	2019

Shorter8:7	Shorter8	organ weights	(none)	epididymis plus vas deferens weight [g] epidid_vd 110162 left right	DO population	m	12-15wks	N=150	2019

Shorter8:9	Shorter8	organ weights	(none)	epididymis plus vas deferens weight mean [g] epidid_vd_mean 110164	DO population	m	12-15wks	N=150	2019

Shorter8:10	Shorter8	organ weights	(none)	epididymis plus vas deferens weight as percentage of body weight [%] epidid_vd_pct_bw 110165	DO population	m	12-15wks	N=150	2019

Shorter8:11	Shorter8	organ weights	(none)	seminal vesicles weight total [g] semin_vesi_tot 110166	DO population	m	12-15wks	N=150	2019

Shorter8:12	Shorter8	organ weights	(none)	seminal vesicles weight as percentage of body weight [%] semin_vesi_pct_bw 110167	DO population	m	12-15wks	N=150	2019

Shorter8:13	Shorter8	sperm count	(none)	sperm count per mouse (x10⁶) [n] sperm_count 110168	DO population	m	12-15wks	N=150	2019

Shorter8:14	Shorter8	sperm count	(none)	sperm count per mg testis weight (x10³) [n] sperm_adj 110169	DO population	m	12-15wks	N=149	2019

Shorter8:15	Shorter8	microscopy	(none)	percentage of sperm that are motile [%] sperm_motile 110170	DO population	m	12-15wks	N=150	2019

Shorter8:16	Shorter8	microscopy	(none)	percentage of motile sperm that are 'vigorous' [%] sperm_vigor 110171	DO population	m	12-15wks	N=149	2019

Shorter8:17	Shorter8	microscopy	(none)	percentage of motile sperm that are 'progressive' [%] sperm_prog 110172	DO population	m	12-15wks	N=149	2019

Shorter8:18	Shorter8	microscopy	(none)	percentage of motile sperm that are 'hyperactivated' [%] sperm_hyper 110173	DO population	m	12-15wks	N=149	2019

Shorter8:19	Shorter8	microscopy	(none)	percentage of motile sperm that are 'intermediate' [%] sperm_int 110174	DO population	m	12-15wks	N=149	2019

Shorter8:20	Shorter8	microscopy	(none)	percentage of motile sperm that are 'slow' [%] sperm_slow 110175	DO population	m	12-15wks	N=149	2019

Shorter8:21	Shorter8	microscopy	(none)	percentage of motile sperm that are 'weak' [%] sperm_weak 110176	DO population	m	12-15wks	N=149	2019

Shorter8:22	Shorter8	microscopy	(none)	sperm mean path velocity [µm/s] sperm_VAP 110177	DO population	m	12-15wks	N=149	2019

Shorter8:23	Shorter8	microscopy	(none)	sperm mean straight line velocity [µm/s] sperm_VSL 110178	DO population	m	12-15wks	N=149	2019

Shorter8:24	Shorter8	microscopy	(none)	sperm mean curvilinear velocity [µm/s] sperm_VCL 110179	DO population	m	12-15wks	N=149	2019

Shorter8:25	Shorter8	microscopy	(none)	sperm mean lateral head displacement (amplitude) [µm] sperm_ALH 110180	DO population	m	12-15wks	N=149	2019

Shorter8:26	Shorter8	microscopy	(none)	sperm mean cross beat frequency [Hz] sperm_BCF 110181	DO population	m	12-15wks	N=149	2019

Shorter8:27	Shorter8	histopathology	(none)	percentage of sperm with normal morphology [%] normal_sperm 110182	DO population	m	12-15wks	N=150	2019

Shorter8:28	Shorter8	histopathology	(none)	percentage of sperm with abnormal head shape [%] abnormal_head 110183	DO population	m	12-15wks	N=150	2019

Shorter8:29	Shorter8	histopathology	(none)	percentage of sperm with abnormal tail bending [%] abnormal_tail 110184	DO population	m	12-15wks	N=150	2019

Shorter8:30	Shorter8	histopathology	(none)	percentage of sperm with broken tails [%] broken_tail 110185	DO population	m	12-15wks	N=150	2019

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