MPD: Phenotype measures mapped to MA:0000396, male reproductive system

Phenotype measures in Payseur2 associated with ontology term
MA:0000396 'male reproductive system'

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All measures in this list are mapped to the ontology descendants of MA:0000396. None are mapped to MA:0000396 directly.

MA:0000411 testis
MA:0002765 male germ cell

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	Sex	Age	Sample Size (Avg)	Year
Payseur2:1	Payseur2	organ weights	(none)	right testis weight adjusted for body weight [mg/g] RelRTestiswt 64001	QTL population	m	10-11wks	N=312	2018

Payseur2:2	Payseur2	organ weights	(none)	right testis weight [mg] RTestisWt 64002	QTL population	m	10-11wks	N=312	2018

Payseur2:3	Payseur2	sperm count	(none)	sperm count per mL (x10⁶) [n] SpermDensity 64003	QTL population	m	10-11wks	N=312	2018

Payseur2:4	Payseur2	organ dimensions	(none)	testis width [mm] TestisWidth 64004	QTL population	m	10-11wks	N=312	2018

Payseur2:5	Payseur2	organ dimensions	(none)	testis height [mm] TestisHeight 64005	QTL population	m	10-11wks	N=312	2018

Payseur2:6	Payseur2	histopathology	(none)	mulinucleated syncytia [n] MNSyncytiaPerTestis 64006	QTL population	m	10-11wks	N=312	2018

Payseur2:7	Payseur2	histopathology	(none)	tubules with apoptosis [n] TubuleswApop 64007	QTL population	m	10-11wks	N=312	2018

Payseur2:8	Payseur2	histopathology	(none)	spermatogonia with apoptosis [n] ApopGonia 64008	QTL population	m	10-11wks	N=312	2018

Payseur2:9	Payseur2	histopathology	(none)	meiotic cells with apoptosis [n] ApopMeiotic 64009	QTL population	m	10-11wks	N=312	2018

Payseur2:10	Payseur2	histopathology	(none)	round spermatids with apoptosis [n] ApopRS 64010	QTL population	m	10-11wks	N=312	2018

Payseur2:11	Payseur2	histopathology	(none)	Stage VII Sertoli cells [n] VIIsertolis 64011	QTL population	m	10-11wks	N=312	2018

Payseur2:12	Payseur2	histopathology	(none)	Stage VII pachytene cells [n] VIIpachys 64012	QTL population	m	10-11wks	N=312	2018

Payseur2:13	Payseur2	histopathology	(none)	Stage VII round spermatids [n] VIIRSs 64013	QTL population	m	10-11wks	N=312	2018

Payseur2:14	Payseur2	histopathology	(none)	Stage VII pachytene cells per Sertoli cell [n] PachyperSertoli 64014	QTL population	m	10-11wks	N=312	2018

Payseur2:15	Payseur2	histopathology	(none)	Stage VII round spermatids per Sertoli cell [n] RSperSertoli 64015	QTL population	m	10-11wks	N=312	2018

Payseur2:16	Payseur2	histopathology	(none)	Stage VII round spermatids per pachytene cell [n] RSperPachy 64016	QTL population	m	10-11wks	N=312	2018

Payseur2:17	Payseur2	histopathology	(none)	Stage VII mean tubule area [µm²] VIITubuleArea 64017	QTL population	m	10-11wks	N=312	2018

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