Phenotype measure:   Brown1   open_ent_prop_EPM


  STRAIN COMPARISON PLOT
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Brown1 - open arms, percent of total entries



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains13 strains
Mean of the strain means25.7   % 28.5   %
Median of the strain means25.4   % 28.8   %
SD of the strain means± 7.50 ± 5.76
Coefficient of variation (CV)0.291 0.202
Min–max range of strain means11.5   –   38.4   % 21.0   –   37.3   %
Mean sample size per strain11.4   mice 12.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 98.4421 98.4421 1.6601 0.1986
strain 12 10620.2641 885.022 14.9248 < 0.0001
sex:strain 12 1738.2869 144.8572 2.4428 0.0048
Residuals 302 17908.2059 59.2987


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 29.7 7.09   12 2.05 0.239 20.0, 46.3 0.53
129S1/SvImJ m 24.7 10.8   12 3.11 0.436 5.9, 45.2 -0.66
A/J f 25.4 11.7   12 3.38 0.462 -0.04
A/J m 30.9 11.2   17 2.72 0.363 10.5, 50.0 0.42
AKR/J f 12.4 5.93   12 1.71 0.477 -1.78
AKR/J m 22.1 7.23   19 1.66 0.327 10.3, 35.3 -1.11
BALB/cByJ f 38.4 9.56   22 2.04 0.249 23.1, 53.3 1.69
BALB/cByJ m 37.3 10.9   12 3.16 0.293 16.7, 53.8 1.53
BALB/cJ f 25.9 10.6   13 2.93 0.407 0.02
BALB/cJ m 37.2 9.4   12 2.71 0.252 21.4, 50.0 1.51
C3H/HeJ f 32.6 5.2   15 1.34 0.16 21.9, 39.5 0.92
C3H/HeJ m 34.3 5.55   16 1.39 0.162 24.7, 47.4 1.01
C57BL/6J f 21.9 6.95   12 2.01 0.318 7.9, 35.7 -0.51
C57BL/6J m 23.5 6.19   12 1.79 0.263 13.5, 36.8 -0.86
CAST/EiJ f 30.9 5.13   5 2.29 0.166 25.0, 37.2 0.69
CAST/EiJ m 30.2 4.54   10 1.44 0.15 20.4, 36.5 0.3
DBA/2J f 24.1 11.3   12 3.28 0.47 -0.22
DBA/2J m 24.6 6.2   13 1.72 0.252 14.6, 35.3 -0.67
FVB/NJ f 25.5 4.13   12 1.19 0.162 19.6, 32.0 -0.03
FVB/NJ m 22.8 4.64   12 1.34 0.204 15.9, 30.2 -0.99
MOLF/EiJ f 22.5 5.24   11 1.58 0.233 11.1, 29.4 -0.43
MOLF/EiJ m 21.0 4.21   11 1.27 0.201 14.8, 30.5 -1.3
SJL/J f 25.2 4.71   13 1.31 0.187 18.4, 33.3 -0.07
SJL/J m 28.8 3.46   12 0.998 0.12 21.7, 34.1 0.06
SM/J f 34.2 4.88   8 1.72 0.143 26.4, 40.6 1.13
SM/J m 32.8 5.37   11 1.62 0.164 23.5, 39.1 0.75
SPRET/EiJ f 11.5 0.0   1   0.0 0.0 11.5, 11.5 -1.9


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 29.6917 2.223 34.0661 25.3172
129S1/SvImJ m 24.7083 2.223 29.0828 20.3339
A/J f 25.3583 2.223 29.7328 20.9839
A/J m 30.8706 1.8677 34.5459 27.1953
AKR/J f 12.4333 2.223 16.8078 8.0589
AKR/J m 22.1 1.7666 25.5765 18.6235
BALB/cByJ f 38.3636 1.6418 41.5944 35.1329
BALB/cByJ m 37.3333 2.223 41.7078 32.9589
BALB/cJ f 25.9385 2.1358 30.1413 21.7356
BALB/cJ m 37.2417 2.223 41.6161 32.8672
C3H/HeJ f 32.6 1.9883 36.5126 28.6874
C3H/HeJ m 34.3313 1.9251 38.1196 30.5429
C57BL/6J f 21.9 2.223 26.2745 17.5255
C57BL/6J m 23.5083 2.223 27.8828 19.1339
CAST/EiJ f 30.92 3.4438 37.6969 24.1431
CAST/EiJ m 30.19 2.4351 34.982 25.398
DBA/2J f 24.1417 2.223 28.5161 19.7672
DBA/2J m 24.6462 2.1358 28.849 20.4433
FVB/NJ f 25.5417 2.223 29.9161 21.1672
FVB/NJ m 22.7583 2.223 27.1328 18.3839
MOLF/EiJ f 22.4818 2.3218 27.0508 17.9128
MOLF/EiJ m 20.9545 2.3218 25.5235 16.3856
SJL/J f 25.1615 2.1358 29.3644 20.9587
SJL/J m 28.7917 2.223 33.1661 24.4172
SM/J f 34.175 2.7226 39.5326 28.8174
SM/J m 32.8 2.3218 37.369 28.231


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 27.2 1.5719 30.2932 24.1068
A/J both 28.1145 1.4517 30.9712 25.2577
AKR/J both 17.2667 1.4197 20.0605 14.4728
BALB/cByJ both 37.8485 1.3818 40.5676 35.1294
BALB/cJ both 31.5901 1.5413 34.6232 28.5569
C3H/HeJ both 33.4656 1.3838 36.1887 30.7425
C57BL/6J both 22.7042 1.5719 25.7974 19.611
CAST/EiJ both 30.555 2.1089 34.705 26.405
DBA/2J both 24.3939 1.5413 27.427 21.3608
FVB/NJ both 24.15 1.5719 27.2432 21.0568
MOLF/EiJ both 21.7182 1.6418 24.9489 18.4874
SJL/J both 26.9766 1.5413 30.0097 23.9435
SM/J both 33.4875 1.7891 37.0081 29.9669




  GWAS USING LINEAR MIXED MODELS